Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16656 | 3' | -57.1 | NC_004156.1 | + | 13959 | 0.69 | 0.826423 |
Target: 5'- uGUGCu-GACCACCaaGCACCGaGGCGa -3' miRNA: 3'- -CACGuuCUGGUGGc-UGUGGCcUCGCg -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 35341 | 0.66 | 0.941554 |
Target: 5'- aGUGUGAacaauucaaaauGugCACCGuauCGuuGGAGUGCa -3' miRNA: 3'- -CACGUU------------CugGUGGCu--GUggCCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 39156 | 0.66 | 0.941554 |
Target: 5'- uGUGCAAG-CCA-CGAUAaaGGAGCa- -3' miRNA: 3'- -CACGUUCuGGUgGCUGUggCCUCGcg -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 50098 | 0.66 | 0.932197 |
Target: 5'- -aGCAAGAauucgaCACCaGGCAUCGGcaacacagGGUGCg -3' miRNA: 3'- caCGUUCUg-----GUGG-CUGUGGCC--------UCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 63065 | 0.66 | 0.932197 |
Target: 5'- -cGCAAGGCUAgagaCGACGCCagcGGugccaaaaAGCGCa -3' miRNA: 3'- caCGUUCUGGUg---GCUGUGG---CC--------UCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 96422 | 0.67 | 0.885918 |
Target: 5'- ---uGGGugCACUGgguGCACUGGGGUGCg -3' miRNA: 3'- cacgUUCugGUGGC---UGUGGCCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 106265 | 0.68 | 0.850141 |
Target: 5'- cUGCccgacgGAGGCCACCuGACGCaCGGAuucCGCa -3' miRNA: 3'- cACG------UUCUGGUGG-CUGUG-GCCUc--GCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 106884 | 0.73 | 0.601147 |
Target: 5'- -cGCAGGAgCACCGGCA---GAGCGCa -3' miRNA: 3'- caCGUUCUgGUGGCUGUggcCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 107229 | 0.66 | 0.936986 |
Target: 5'- -cGCAGGAgUACCGAgucugaUGCCGcuuggucugaGAGCGCu -3' miRNA: 3'- caCGUUCUgGUGGCU------GUGGC----------CUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 110253 | 0.68 | 0.842411 |
Target: 5'- cUGCuGGGCCACaGACACaaCGGAGCcCg -3' miRNA: 3'- cACGuUCUGGUGgCUGUG--GCCUCGcG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 123987 | 0.67 | 0.898797 |
Target: 5'- -cGCAGGcACCAaacuugaCGGUACCGGAGUGg -3' miRNA: 3'- caCGUUC-UGGUg------GCUGUGGCCUCGCg -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 124579 | 0.68 | 0.872203 |
Target: 5'- -cGCc--GCCGCCGACGCCaagggacgagauGGAGCuGCu -3' miRNA: 3'- caCGuucUGGUGGCUGUGG------------CCUCG-CG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 127046 | 0.7 | 0.737813 |
Target: 5'- -cGCGAGcAUCACCGGCAaacacuagCGGAGaCGCu -3' miRNA: 3'- caCGUUC-UGGUGGCUGUg-------GCCUC-GCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 129064 | 0.72 | 0.6702 |
Target: 5'- cGUGUAaaacAGAUUAcCCGACACCaGAGUGCc -3' miRNA: 3'- -CACGU----UCUGGU-GGCUGUGGcCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 129949 | 0.69 | 0.834502 |
Target: 5'- aUGCAAGACUAcaaugugcuacCCGuacCGCCGGGGaGCa -3' miRNA: 3'- cACGUUCUGGU-----------GGCu--GUGGCCUCgCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 134131 | 0.69 | 0.834502 |
Target: 5'- -cGCAAGugCACCGACACCauacucuUGCa -3' miRNA: 3'- caCGUUCugGUGGCUGUGGccuc---GCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 139476 | 0.66 | 0.92195 |
Target: 5'- -gGC-AGACUguAUCGACACCGuacGCGCa -3' miRNA: 3'- caCGuUCUGG--UGGCUGUGGCcu-CGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 142851 | 0.68 | 0.850141 |
Target: 5'- aUGCAAGA--AgCGGCACUGGuGUGCg -3' miRNA: 3'- cACGUUCUggUgGCUGUGGCCuCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 146591 | 0.66 | 0.941554 |
Target: 5'- uUGUAGGAuuCCACCcuacacuuGGCAUCGGAGagaaGCc -3' miRNA: 3'- cACGUUCU--GGUGG--------CUGUGGCCUCg---CG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 147370 | 0.66 | 0.92195 |
Target: 5'- uGUGCAuGACCuAUCGugAuCCGGAcaCGCa -3' miRNA: 3'- -CACGUuCUGG-UGGCugU-GGCCUc-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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