Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16656 | 3' | -57.1 | NC_004156.1 | + | 123987 | 0.67 | 0.898797 |
Target: 5'- -cGCAGGcACCAaacuugaCGGUACCGGAGUGg -3' miRNA: 3'- caCGUUC-UGGUg------GCUGUGGCCUCGCg -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 205744 | 0.67 | 0.898797 |
Target: 5'- aGUGCAuguuuGAUCACCGGCAauaGGAuCGUg -3' miRNA: 3'- -CACGUu----CUGGUGGCUGUgg-CCUcGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 96422 | 0.67 | 0.885918 |
Target: 5'- ---uGGGugCACUGgguGCACUGGGGUGCg -3' miRNA: 3'- cacgUUCugGUGGC---UGUGGCCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 124579 | 0.68 | 0.872203 |
Target: 5'- -cGCc--GCCGCCGACGCCaagggacgagauGGAGCuGCu -3' miRNA: 3'- caCGuucUGGUGGCUGUGG------------CCUCG-CG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 173194 | 0.68 | 0.872203 |
Target: 5'- cGUGCAAGuCUACCGAguuggccaaCACCaauGuGCGCa -3' miRNA: 3'- -CACGUUCuGGUGGCU---------GUGGc--CuCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 13959 | 0.69 | 0.826423 |
Target: 5'- uGUGCu-GACCACCaaGCACCGaGGCGa -3' miRNA: 3'- -CACGuuCUGGUGGc-UGUGGCcUCGCg -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 157452 | 0.7 | 0.747195 |
Target: 5'- cUGCAAGACUAuUUGGCAUCGGAGaGUa -3' miRNA: 3'- cACGUUCUGGU-GGCUGUGGCCUCgCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 129064 | 0.72 | 0.6702 |
Target: 5'- cGUGUAaaacAGAUUAcCCGACACCaGAGUGCc -3' miRNA: 3'- -CACGU----UCUGGU-GGCUGUGGcCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 201961 | 1.11 | 0.002562 |
Target: 5'- cGUGCAAGACCACCGACACCGGAGCGCu -3' miRNA: 3'- -CACGUUCUGGUGGCUGUGGCCUCGCG- -5' |
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16656 | 3' | -57.1 | NC_004156.1 | + | 39156 | 0.66 | 0.941554 |
Target: 5'- uGUGCAAG-CCA-CGAUAaaGGAGCa- -3' miRNA: 3'- -CACGUUCuGGUgGCUGUggCCUCGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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