miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16658 3' -54.2 NC_004156.1 + 149332 0.66 0.982981
Target:  5'- gUGGCGUCgguguacgaGGAGGUgguugugUUGGCUguaGUGUGGAa -3'
miRNA:   3'- -ACCGUAG---------CCUCCA-------AACUGG---CACGUCU- -5'
16658 3' -54.2 NC_004156.1 + 138924 0.66 0.981197
Target:  5'- cGGCcuccUCGGGGGUcaucUUGcACUGUGCGc- -3'
miRNA:   3'- aCCGu---AGCCUCCA----AAC-UGGCACGUcu -5'
16658 3' -54.2 NC_004156.1 + 18322 0.66 0.974234
Target:  5'- aUGGCcUCGGAGGccaUUG-CCG-GUGGAa -3'
miRNA:   3'- -ACCGuAGCCUCCa--AACuGGCaCGUCU- -5'
16658 3' -54.2 NC_004156.1 + 114838 0.67 0.968354
Target:  5'- gUGGUGUUGGAGGUagugcuaguggugUUGGuaGUGguGAu -3'
miRNA:   3'- -ACCGUAGCCUCCA-------------AACUggCACguCU- -5'
16658 3' -54.2 NC_004156.1 + 122642 0.69 0.929938
Target:  5'- cGGCAUCGGGgacauGGUgauuggauuuggaaUGGCCGaUGCAGu -3'
miRNA:   3'- aCCGUAGCCU-----CCAa-------------ACUGGC-ACGUCu -5'
16658 3' -54.2 NC_004156.1 + 127803 0.7 0.871544
Target:  5'- cGGUGUCGGAGGguaGAgUGUGCcGAu -3'
miRNA:   3'- aCCGUAGCCUCCaaaCUgGCACGuCU- -5'
16658 3' -54.2 NC_004156.1 + 214199 1.09 0.006305
Target:  5'- cUGGCAUCGGAGGUUUGACCGUGCAGAu -3'
miRNA:   3'- -ACCGUAGCCUCCAAACUGGCACGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.