miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1666 5' -57.5 NC_001347.2 + 85070 0.66 0.930891
Target:  5'- aAGAuGGCCGagaCCAgGUAGACgguaGGCa -3'
miRNA:   3'- cUCUuUCGGCg--GGUgCAUCUGg---CCGc -5'
1666 5' -57.5 NC_001347.2 + 178293 0.66 0.930891
Target:  5'- gGAGGAAGCUucggugcgGCCCACGcgucaGCUGGUGu -3'
miRNA:   3'- -CUCUUUCGG--------CGGGUGCauc--UGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 19338 0.66 0.930395
Target:  5'- aGAGAAAGagGCCUgguuacaGCGc-GGCCGGCGa -3'
miRNA:   3'- -CUCUUUCggCGGG-------UGCauCUGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 142528 0.66 0.925834
Target:  5'- gGAGguGGCUGCUUucuCGUGaacGCCGGCGa -3'
miRNA:   3'- -CUCuuUCGGCGGGu--GCAUc--UGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 185351 0.66 0.925834
Target:  5'- cGAGcAGGCCGCCgC-CGUggGGGCC-GCGg -3'
miRNA:   3'- -CUCuUUCGGCGG-GuGCA--UCUGGcCGC- -5'
1666 5' -57.5 NC_001347.2 + 107121 0.66 0.922694
Target:  5'- uGGAAGGCgGCaucucggggCCGCGUGGACucaccagccguaucuCGGCGc -3'
miRNA:   3'- cUCUUUCGgCG---------GGUGCAUCUG---------------GCCGC- -5'
1666 5' -57.5 NC_001347.2 + 148346 0.66 0.920556
Target:  5'- aGGGAcagAAGCCuaaCCUGC-UAGACCGGCu -3'
miRNA:   3'- -CUCU---UUCGGc--GGGUGcAUCUGGCCGc -5'
1666 5' -57.5 NC_001347.2 + 96804 0.66 0.920556
Target:  5'- cAGAGAGCCa-CCAgGU--GCCGGCGa -3'
miRNA:   3'- cUCUUUCGGcgGGUgCAucUGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 1948 0.66 0.915056
Target:  5'- ---uGGGCUGCgCgGCG-GGGCCGGCGa -3'
miRNA:   3'- cucuUUCGGCG-GgUGCaUCUGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 47764 0.66 0.915056
Target:  5'- -cGAAuccaauAGCCGCCgugccuccggUugGUGG-CCGGCGg -3'
miRNA:   3'- cuCUU------UCGGCGG----------GugCAUCuGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 206898 0.66 0.909336
Target:  5'- aAGAGAcCCGUCCACGggGGACaUGGCc -3'
miRNA:   3'- cUCUUUcGGCGGGUGCa-UCUG-GCCGc -5'
1666 5' -57.5 NC_001347.2 + 160695 0.67 0.890875
Target:  5'- -----cGCUGCCUACGc-GAUCGGCGg -3'
miRNA:   3'- cucuuuCGGCGGGUGCauCUGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 16525 0.67 0.890875
Target:  5'- cGAGGuagcgccAGCCGCCCGCuu-GGCCGaGUGc -3'
miRNA:   3'- -CUCUu------UCGGCGGGUGcauCUGGC-CGC- -5'
1666 5' -57.5 NC_001347.2 + 113173 0.67 0.890875
Target:  5'- aGGGAAcgcgcgccccAGCCGCCgGCGUGG--CGGCc -3'
miRNA:   3'- -CUCUU----------UCGGCGGgUGCAUCugGCCGc -5'
1666 5' -57.5 NC_001347.2 + 53524 0.67 0.877509
Target:  5'- uGGAGAGCUggGCCCACGUcuuCCGGg- -3'
miRNA:   3'- cUCUUUCGG--CGGGUGCAucuGGCCgc -5'
1666 5' -57.5 NC_001347.2 + 174754 0.68 0.855951
Target:  5'- aAGAAcugGGCUauGUCCGCuucgAGACCGGCGg -3'
miRNA:   3'- cUCUU---UCGG--CGGGUGca--UCUGGCCGC- -5'
1666 5' -57.5 NC_001347.2 + 80827 0.68 0.848382
Target:  5'- uAGAccGCCGCCCucGCGUGGuCC-GCGu -3'
miRNA:   3'- cUCUuuCGGCGGG--UGCAUCuGGcCGC- -5'
1666 5' -57.5 NC_001347.2 + 194088 0.68 0.848382
Target:  5'- -cGAGAGCaucgGCCC-CGUGGACCGcaGCu -3'
miRNA:   3'- cuCUUUCGg---CGGGuGCAUCUGGC--CGc -5'
1666 5' -57.5 NC_001347.2 + 99136 0.68 0.832706
Target:  5'- uGGGAAGCCGCggcgCGCGUAcgccgagacccGACgCGGCGa -3'
miRNA:   3'- cUCUUUCGGCGg---GUGCAU-----------CUG-GCCGC- -5'
1666 5' -57.5 NC_001347.2 + 125002 0.69 0.807942
Target:  5'- uGGGGcuGCUGCUgCACGggcucGACCGGCGg -3'
miRNA:   3'- -CUCUuuCGGCGG-GUGCau---CUGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.