miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16660 3' -49.6 NC_004156.1 + 65955 0.66 0.999504
Target:  5'- cUGAGgagGAG-GAUGAgaaUGAGGAUGa- -3'
miRNA:   3'- aGCUCaa-CUCgCUACU---ACUCCUACaa -5'
16660 3' -49.6 NC_004156.1 + 222819 0.66 0.999242
Target:  5'- aUUGuuagUGAGCGuguUGAUGAGGAcaaUGUUa -3'
miRNA:   3'- -AGCuca-ACUCGCu--ACUACUCCU---ACAA- -5'
16660 3' -49.6 NC_004156.1 + 224674 0.66 0.999053
Target:  5'- -gGAuUUGGGCGGUuguuaaucgguuaGAUGAGGAUGa- -3'
miRNA:   3'- agCUcAACUCGCUA-------------CUACUCCUACaa -5'
16660 3' -49.6 NC_004156.1 + 153792 0.67 0.997644
Target:  5'- -gGAGgacuaUGAGgGAUugGAUGAGGAUGg- -3'
miRNA:   3'- agCUCa----ACUCgCUA--CUACUCCUACaa -5'
16660 3' -49.6 NC_004156.1 + 42368 0.68 0.996701
Target:  5'- cCGAGUUGGuCGAUGAUG-GGAa--- -3'
miRNA:   3'- aGCUCAACUcGCUACUACuCCUacaa -5'
16660 3' -49.6 NC_004156.1 + 224832 0.69 0.992932
Target:  5'- gUUGAGUUagaugaugGAGCaGGcuugGAUGAGGAUGUUg -3'
miRNA:   3'- -AGCUCAA--------CUCG-CUa---CUACUCCUACAA- -5'
16660 3' -49.6 NC_004156.1 + 39973 0.69 0.991872
Target:  5'- gUCGAGUcGAGUGAUGAcagUGAcGAUGa- -3'
miRNA:   3'- -AGCUCAaCUCGCUACU---ACUcCUACaa -5'
16660 3' -49.6 NC_004156.1 + 147739 0.71 0.967068
Target:  5'- -gGGGggGGGUGuggagGAUGAGGAUGUUu -3'
miRNA:   3'- agCUCaaCUCGCua---CUACUCCUACAA- -5'
16660 3' -49.6 NC_004156.1 + 185734 0.76 0.82915
Target:  5'- cUCGAGaUGGGUGuaugGAUGAGGAUGg- -3'
miRNA:   3'- -AGCUCaACUCGCua--CUACUCCUACaa -5'
16660 3' -49.6 NC_004156.1 + 222757 0.78 0.754706
Target:  5'- aCGAcGcUUGAGCGGUGAUGGGGuUGUUg -3'
miRNA:   3'- aGCU-C-AACUCGCUACUACUCCuACAA- -5'
16660 3' -49.6 NC_004156.1 + 223053 1.06 0.02383
Target:  5'- aUCGAGUUGAGCGAUGAUGAGGAUGUUc -3'
miRNA:   3'- -AGCUCAACUCGCUACUACUCCUACAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.