miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16660 5' -53.1 NC_004156.1 + 7988 0.66 0.990993
Target:  5'- uGCGGC-ACCCUAagACgCGCUCAGGa- -3'
miRNA:   3'- -UGUUGuUGGGGUagUG-GCGAGUUCgc -5'
16660 5' -53.1 NC_004156.1 + 34592 0.66 0.990875
Target:  5'- aACAAUAACCCCAaUACCGUauugauaUUAaaGGCa -3'
miRNA:   3'- -UGUUGUUGGGGUaGUGGCG-------AGU--UCGc -5'
16660 5' -53.1 NC_004156.1 + 23583 0.66 0.986395
Target:  5'- cACAACAACCCacugaccaacccccUcgCACCGUcacguugucuuUCAGGCa -3'
miRNA:   3'- -UGUUGUUGGG--------------GuaGUGGCG-----------AGUUCGc -5'
16660 5' -53.1 NC_004156.1 + 226989 0.66 0.985221
Target:  5'- cCGAgAACCCaa--GCCGCUgGAGCa -3'
miRNA:   3'- uGUUgUUGGGguagUGGCGAgUUCGc -5'
16660 5' -53.1 NC_004156.1 + 183237 0.67 0.9793
Target:  5'- aACGGCAuuCUCCAUCACCGacagaaAGGCa -3'
miRNA:   3'- -UGUUGUu-GGGGUAGUGGCgag---UUCGc -5'
16660 5' -53.1 NC_004156.1 + 166039 0.67 0.97698
Target:  5'- uUAGCGGCaCCCAUC-UCGgUCGAGCc -3'
miRNA:   3'- uGUUGUUG-GGGUAGuGGCgAGUUCGc -5'
16660 5' -53.1 NC_004156.1 + 91937 0.68 0.96888
Target:  5'- uCAACAAgCUugacaaCAUCACCaagaagGCUCAGGCGg -3'
miRNA:   3'- uGUUGUUgGG------GUAGUGG------CGAGUUCGC- -5'
16660 5' -53.1 NC_004156.1 + 36888 0.68 0.958931
Target:  5'- uGCAAUGAUuuUCCAcgaUCcCCGCUCAAGCa -3'
miRNA:   3'- -UGUUGUUG--GGGU---AGuGGCGAGUUCGc -5'
16660 5' -53.1 NC_004156.1 + 145675 0.69 0.951199
Target:  5'- aACAACAACCUacUCAgggacaggguCCgGCUCAGGCGc -3'
miRNA:   3'- -UGUUGUUGGGguAGU----------GG-CGAGUUCGC- -5'
16660 5' -53.1 NC_004156.1 + 115707 0.69 0.94699
Target:  5'- -aAACGAUCCCAUCuuuuauCCGguaCUCGAGCa -3'
miRNA:   3'- ugUUGUUGGGGUAGu-----GGC---GAGUUCGc -5'
16660 5' -53.1 NC_004156.1 + 222798 0.69 0.94699
Target:  5'- -gAACAuCCUCAUCAUCGCUCAAcuCGa -3'
miRNA:   3'- ugUUGUuGGGGUAGUGGCGAGUUc-GC- -5'
16660 5' -53.1 NC_004156.1 + 8200 0.69 0.937872
Target:  5'- uCAGCAACCCCAUCAUCaGC---AGUGu -3'
miRNA:   3'- uGUUGUUGGGGUAGUGG-CGaguUCGC- -5'
16660 5' -53.1 NC_004156.1 + 102544 0.7 0.916792
Target:  5'- aACAACAccACCgCCAcCACCGC-CAcAGCGa -3'
miRNA:   3'- -UGUUGU--UGG-GGUaGUGGCGaGU-UCGC- -5'
16660 5' -53.1 NC_004156.1 + 39460 0.72 0.847934
Target:  5'- uCAACGAUCCC-UCACCGgaCGAGgCGa -3'
miRNA:   3'- uGUUGUUGGGGuAGUGGCgaGUUC-GC- -5'
16660 5' -53.1 NC_004156.1 + 202035 0.73 0.81463
Target:  5'- cCAACAuuucgauaaACUCCAauUUAUCGCUCAAGCGu -3'
miRNA:   3'- uGUUGU---------UGGGGU--AGUGGCGAGUUCGC- -5'
16660 5' -53.1 NC_004156.1 + 164617 0.76 0.660647
Target:  5'- uCAGCAcCCCCAUCGCCGa-CAAGCc -3'
miRNA:   3'- uGUUGUuGGGGUAGUGGCgaGUUCGc -5'
16660 5' -53.1 NC_004156.1 + 223015 1.08 0.008571
Target:  5'- aACAACAACCCCAUCACCGCUCAAGCGu -3'
miRNA:   3'- -UGUUGUUGGGGUAGUGGCGAGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.