miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16661 3' -48.8 NC_004156.1 + 163524 0.66 0.999875
Target:  5'- aCUUGGugcccgagugucuccACUGGAAUCCGuacacggguCCCAGAUc- -3'
miRNA:   3'- -GAACU---------------UGAUCUUGGGCu--------GGGUCUAag -5'
16661 3' -48.8 NC_004156.1 + 153845 0.66 0.999861
Target:  5'- --------uGAACCUGACCCAG-UUCg -3'
miRNA:   3'- gaacuugauCUUGGGCUGGGUCuAAG- -5'
16661 3' -48.8 NC_004156.1 + 155768 0.66 0.999861
Target:  5'- aCUUaAACUAaAACgCCGACucuCCAGAUUCa -3'
miRNA:   3'- -GAAcUUGAUcUUG-GGCUG---GGUCUAAG- -5'
16661 3' -48.8 NC_004156.1 + 222223 0.66 0.999712
Target:  5'- --aGAACcAGAACCCGAgucuguaCCAGAa-- -3'
miRNA:   3'- gaaCUUGaUCUUGGGCUg------GGUCUaag -5'
16661 3' -48.8 NC_004156.1 + 84802 0.67 0.999438
Target:  5'- --aGAGuCUAGAcggcaaguauACaCCG-CCCAGAUUCa -3'
miRNA:   3'- gaaCUU-GAUCU----------UG-GGCuGGGUCUAAG- -5'
16661 3' -48.8 NC_004156.1 + 180761 0.67 0.999425
Target:  5'- uCUUG-ACUGGGACUcacgaccaccauuCGGCCCAGGg-- -3'
miRNA:   3'- -GAACuUGAUCUUGG-------------GCUGGGUCUaag -5'
16661 3' -48.8 NC_004156.1 + 210399 0.68 0.998477
Target:  5'- --aGAGCgAGAACgCGACCUGGAUc- -3'
miRNA:   3'- gaaCUUGaUCUUGgGCUGGGUCUAag -5'
16661 3' -48.8 NC_004156.1 + 67629 0.68 0.998477
Target:  5'- aCUUGAGCaUGGGACCaCcGCCCAaaGAUUUu -3'
miRNA:   3'- -GAACUUG-AUCUUGG-GcUGGGU--CUAAG- -5'
16661 3' -48.8 NC_004156.1 + 110302 0.68 0.998172
Target:  5'- -aUGAGCUGGGACCCaAUUCAauuucGAUUCc -3'
miRNA:   3'- gaACUUGAUCUUGGGcUGGGU-----CUAAG- -5'
16661 3' -48.8 NC_004156.1 + 149635 0.68 0.997817
Target:  5'- uUUGAGuaaGGAGCCCGACUCuaauggAGAUUCc -3'
miRNA:   3'- gAACUUga-UCUUGGGCUGGG------UCUAAG- -5'
16661 3' -48.8 NC_004156.1 + 142443 0.69 0.995066
Target:  5'- gUUGAGCUAG-ACUCGGCUUGGAcUCc -3'
miRNA:   3'- gAACUUGAUCuUGGGCUGGGUCUaAG- -5'
16661 3' -48.8 NC_004156.1 + 178732 0.7 0.99427
Target:  5'- gUUGAACgaAGAcgauuCCCGA-CCAGAUUCa -3'
miRNA:   3'- gAACUUGa-UCUu----GGGCUgGGUCUAAG- -5'
16661 3' -48.8 NC_004156.1 + 180718 0.7 0.989996
Target:  5'- --cGAAUUGGuGCCCGGCaCCGGAa-- -3'
miRNA:   3'- gaaCUUGAUCuUGGGCUG-GGUCUaag -5'
16661 3' -48.8 NC_004156.1 + 163800 0.72 0.979339
Target:  5'- --cGAuCUGGGACCCGugUaCGGAUUCc -3'
miRNA:   3'- gaaCUuGAUCUUGGGCugG-GUCUAAG- -5'
16661 3' -48.8 NC_004156.1 + 197027 0.79 0.730287
Target:  5'- --cGAACUGGAACCCGGCUCuGAUc- -3'
miRNA:   3'- gaaCUUGAUCUUGGGCUGGGuCUAag -5'
16661 3' -48.8 NC_004156.1 + 9066 1.12 0.013481
Target:  5'- aCUUGAACUAGAACCCGACCCAGAUUCg -3'
miRNA:   3'- -GAACUUGAUCUUGGGCUGGGUCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.