miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16662 5' -52.1 NC_004156.1 + 175992 0.66 0.997086
Target:  5'- cCUGCACugAGuCGCUCUGAAU--UGUCGUc -3'
miRNA:   3'- -GGCGUG--UC-GUGAGACUUGccAUAGCA- -5'
16662 5' -52.1 NC_004156.1 + 115697 0.66 0.996583
Target:  5'- aCGUACugAGCGCUCgguuUGAACGuGUAgcauUCGUg -3'
miRNA:   3'- gGCGUG--UCGUGAG----ACUUGC-CAU----AGCA- -5'
16662 5' -52.1 NC_004156.1 + 143220 0.66 0.996583
Target:  5'- cUCGaCACGGCAUcUUGAagACGGaAUCGUg -3'
miRNA:   3'- -GGC-GUGUCGUGaGACU--UGCCaUAGCA- -5'
16662 5' -52.1 NC_004156.1 + 145945 0.67 0.992882
Target:  5'- gUGCGCAGCACgauccUCUGcaggauCGGUAcUCGUu -3'
miRNA:   3'- gGCGUGUCGUG-----AGACuu----GCCAU-AGCA- -5'
16662 5' -52.1 NC_004156.1 + 75523 0.67 0.989445
Target:  5'- cUCGCGCAGCuccuCUCUGGACagaaaGGUucugCGa -3'
miRNA:   3'- -GGCGUGUCGu---GAGACUUG-----CCAua--GCa -5'
16662 5' -52.1 NC_004156.1 + 166710 0.67 0.989445
Target:  5'- -gGCACAGuCugUUUGGugGGUcuguAUCGg -3'
miRNA:   3'- ggCGUGUC-GugAGACUugCCA----UAGCa -5'
16662 5' -52.1 NC_004156.1 + 128799 0.68 0.982995
Target:  5'- -aGCugGGCACUCU----GGUGUCGg -3'
miRNA:   3'- ggCGugUCGUGAGAcuugCCAUAGCa -5'
16662 5' -52.1 NC_004156.1 + 1087 0.72 0.910024
Target:  5'- gCGgACGGCACUCcuaaacguAGCGGUAUCGa -3'
miRNA:   3'- gGCgUGUCGUGAGac------UUGCCAUAGCa -5'
16662 5' -52.1 NC_004156.1 + 69067 0.74 0.838951
Target:  5'- aCCGUACugagacaguuugAGCAC-CUGAACGGUAcCGUc -3'
miRNA:   3'- -GGCGUG------------UCGUGaGACUUGCCAUaGCA- -5'
16662 5' -52.1 NC_004156.1 + 169292 0.74 0.80499
Target:  5'- aCGUACGGCACUCguUGAcCGGUcUCGg -3'
miRNA:   3'- gGCGUGUCGUGAG--ACUuGCCAuAGCa -5'
16662 5' -52.1 NC_004156.1 + 15822 1.11 0.008474
Target:  5'- aCCGCACAGCACUCUGAACGGUAUCGUa -3'
miRNA:   3'- -GGCGUGUCGUGAGACUUGCCAUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.