miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16663 5' -47.5 NC_004156.1 + 61853 0.66 0.999984
Target:  5'- aAUACUAUgaaaacauugAGa-CCAAAcaGCGGGUACCg -3'
miRNA:   3'- cUAUGAUG----------UCacGGUUU--UGCCCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 20602 0.66 0.999979
Target:  5'- cGGUGCUGuuGUGCCAGcucgugcauCGGccuaGUGCCg -3'
miRNA:   3'- -CUAUGAUguCACGGUUuu-------GCC----CAUGG- -5'
16663 5' -47.5 NC_004156.1 + 107081 0.66 0.999979
Target:  5'- aGAUugUACgAGUGUCGGGA-GGaGUGCUc -3'
miRNA:   3'- -CUAugAUG-UCACGGUUUUgCC-CAUGG- -5'
16663 5' -47.5 NC_004156.1 + 134229 0.66 0.999971
Target:  5'- --cACUAUcGUGCUaacgGAAACGuuuGGUGCCa -3'
miRNA:   3'- cuaUGAUGuCACGG----UUUUGC---CCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 143857 0.66 0.999971
Target:  5'- cAUGCUGCuGGUGCCGGcuuGCaGGUugUc -3'
miRNA:   3'- cUAUGAUG-UCACGGUUu--UGcCCAugG- -5'
16663 5' -47.5 NC_004156.1 + 192085 0.66 0.999971
Target:  5'- cGAUGCUcuuguGCAGUGUCAAAAUcu-UACCa -3'
miRNA:   3'- -CUAUGA-----UGUCACGGUUUUGcccAUGG- -5'
16663 5' -47.5 NC_004156.1 + 177500 0.67 0.99991
Target:  5'- aGAUGC-ACAGUaugauggacgggGCCAGuuCGGGguacaGCCa -3'
miRNA:   3'- -CUAUGaUGUCA------------CGGUUuuGCCCa----UGG- -5'
16663 5' -47.5 NC_004156.1 + 212050 0.67 0.999879
Target:  5'- uAUGCUGCAuGUGCCAaagucuaGAGCGagagcuuauGGUACa -3'
miRNA:   3'- cUAUGAUGU-CACGGU-------UUUGC---------CCAUGg -5'
16663 5' -47.5 NC_004156.1 + 88722 0.67 0.999848
Target:  5'- aAUACUaACAGUGCCAAGA---GUACUa -3'
miRNA:   3'- cUAUGA-UGUCACGGUUUUgccCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 60307 0.68 0.999805
Target:  5'- uGAUGaccaUGCGGccacuUGCCugaaaguguGCGGGUGCCu -3'
miRNA:   3'- -CUAUg---AUGUC-----ACGGuuu------UGCCCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 210445 0.69 0.999244
Target:  5'- --gGCUGCGGccucUGCCAGAuCGGGcagUGCUa -3'
miRNA:   3'- cuaUGAUGUC----ACGGUUUuGCCC---AUGG- -5'
16663 5' -47.5 NC_004156.1 + 112039 0.7 0.997636
Target:  5'- uGAUGCUAUAGUguagGCCA--AUGGGUGUCu -3'
miRNA:   3'- -CUAUGAUGUCA----CGGUuuUGCCCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 171120 0.7 0.996685
Target:  5'- --gGCUACGGUGgaagcucugguuCCGGAuCGGGUGCg -3'
miRNA:   3'- cuaUGAUGUCAC------------GGUUUuGCCCAUGg -5'
16663 5' -47.5 NC_004156.1 + 208546 0.72 0.992874
Target:  5'- aGUACUACA-UGCUAAAcaggcacgguguACGGGUGCg -3'
miRNA:   3'- cUAUGAUGUcACGGUUU------------UGCCCAUGg -5'
16663 5' -47.5 NC_004156.1 + 158483 0.73 0.978934
Target:  5'- --cACUGuCGGUGCCGAaacggaggaggaggaGAcuCGGGUGCCa -3'
miRNA:   3'- cuaUGAU-GUCACGGUU---------------UU--GCCCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 164382 0.76 0.92701
Target:  5'- gGGUGCUGaaugaucCAGUGCCAGcACuGGUACCc -3'
miRNA:   3'- -CUAUGAU-------GUCACGGUUuUGcCCAUGG- -5'
16663 5' -47.5 NC_004156.1 + 25388 1.15 0.013081
Target:  5'- cGAUACUACAGUGCCAAAACGGGUACCa -3'
miRNA:   3'- -CUAUGAUGUCACGGUUUUGCCCAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.