miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16664 3' -52.5 NC_004156.1 + 145929 0.66 0.993576
Target:  5'- cGGU-GCACacugcGACUCGACUGCCc- -3'
miRNA:   3'- -CCAuCGUGguau-CUGAGCUGGUGGuu -5'
16664 3' -52.5 NC_004156.1 + 37248 0.66 0.992616
Target:  5'- uGGaUAGUugCGUAuGAUaaugUUGGCCACCAAc -3'
miRNA:   3'- -CC-AUCGugGUAU-CUG----AGCUGGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 92037 0.66 0.992616
Target:  5'- cGUGGCAUCcUGGAC---GCCACCGAc -3'
miRNA:   3'- cCAUCGUGGuAUCUGagcUGGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 158288 0.66 0.992616
Target:  5'- uGGUAGCACUaguaGUAGuaaUGugCACCGAa -3'
miRNA:   3'- -CCAUCGUGG----UAUCugaGCugGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 186005 0.66 0.990355
Target:  5'- --cAGCACCGgugGGACUCGuuACCuuacaACCGAc -3'
miRNA:   3'- ccaUCGUGGUa--UCUGAGC--UGG-----UGGUU- -5'
16664 3' -52.5 NC_004156.1 + 81619 0.66 0.990229
Target:  5'- cGGUauaGGCacaccuaucgaucACCAUGGACUCGGgCGCUc- -3'
miRNA:   3'- -CCA---UCG-------------UGGUAUCUGAGCUgGUGGuu -5'
16664 3' -52.5 NC_004156.1 + 224054 0.66 0.989037
Target:  5'- --aAGCAgucucaauguCCAUGGGCUCGGuuACCAc -3'
miRNA:   3'- ccaUCGU----------GGUAUCUGAGCUggUGGUu -5'
16664 3' -52.5 NC_004156.1 + 106243 0.67 0.985985
Target:  5'- cGGUAGaAUCAUgGGACUCGAUCugCc- -3'
miRNA:   3'- -CCAUCgUGGUA-UCUGAGCUGGugGuu -5'
16664 3' -52.5 NC_004156.1 + 47504 0.67 0.984234
Target:  5'- --cAGUGCUAUAGACUCG-CUAUCAu -3'
miRNA:   3'- ccaUCGUGGUAUCUGAGCuGGUGGUu -5'
16664 3' -52.5 NC_004156.1 + 20509 0.67 0.982321
Target:  5'- cGGcacGCACCAgauUGGACaCGGCCGCUAu -3'
miRNA:   3'- -CCau-CGUGGU---AUCUGaGCUGGUGGUu -5'
16664 3' -52.5 NC_004156.1 + 96011 0.67 0.982321
Target:  5'- --cGGCACCuUGGACaUGAgCACCAGa -3'
miRNA:   3'- ccaUCGUGGuAUCUGaGCUgGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 130716 0.67 0.982321
Target:  5'- cGGUGagauuuguGCACCGUuGGCuuuuUCGugCACCAGa -3'
miRNA:   3'- -CCAU--------CGUGGUAuCUG----AGCugGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 136075 0.67 0.982321
Target:  5'- uGGUGGCACCGau-GCccaCGGCUACCAc -3'
miRNA:   3'- -CCAUCGUGGUaucUGa--GCUGGUGGUu -5'
16664 3' -52.5 NC_004156.1 + 71098 0.67 0.982321
Target:  5'- cGUGGagACUGUGGACgaugaGGCCACCAAu -3'
miRNA:   3'- cCAUCg-UGGUAUCUGag---CUGGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 136131 0.67 0.980239
Target:  5'- gGGUcGGUGCUuaaaguuuGACUUGGCCGCCGAg -3'
miRNA:   3'- -CCA-UCGUGGuau-----CUGAGCUGGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 16935 0.68 0.97798
Target:  5'- uGUAGUugC-UGGGCUUGucguCCACCAGg -3'
miRNA:   3'- cCAUCGugGuAUCUGAGCu---GGUGGUU- -5'
16664 3' -52.5 NC_004156.1 + 133305 0.68 0.972898
Target:  5'- ----aCACCAUAGACUCGAUguucaACCAGg -3'
miRNA:   3'- ccaucGUGGUAUCUGAGCUGg----UGGUU- -5'
16664 3' -52.5 NC_004156.1 + 137477 0.68 0.970061
Target:  5'- --cAGaCACCuUGGACUCGGCCAUUg- -3'
miRNA:   3'- ccaUC-GUGGuAUCUGAGCUGGUGGuu -5'
16664 3' -52.5 NC_004156.1 + 178625 0.68 0.970061
Target:  5'- --cGGCaAUCAUGGGCUCGacaaagGCCACCGc -3'
miRNA:   3'- ccaUCG-UGGUAUCUGAGC------UGGUGGUu -5'
16664 3' -52.5 NC_004156.1 + 131255 0.69 0.96029
Target:  5'- cGGUAGCAUUAaacgcaaacUGGAagaUGACCACCAAc -3'
miRNA:   3'- -CCAUCGUGGU---------AUCUga-GCUGGUGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.