miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16664 5' -44.2 NC_004156.1 + 185547 0.66 1
Target:  5'- ---cGGAAUUGgcucCAUAGUa-GUGAGUg -3'
miRNA:   3'- uuaaCCUUAACa---GUAUCAggUACUCG- -5'
16664 5' -44.2 NC_004156.1 + 72137 0.66 1
Target:  5'- aAGUUGGggUUGUUGUAGUUauuguUGuAGUu -3'
miRNA:   3'- -UUAACCuuAACAGUAUCAGgu---AC-UCG- -5'
16664 5' -44.2 NC_004156.1 + 186133 0.66 1
Target:  5'- gAAUUGGAAUcGUCAUuGUCauuaGAGUa -3'
miRNA:   3'- -UUAACCUUAaCAGUAuCAGgua-CUCG- -5'
16664 5' -44.2 NC_004156.1 + 130441 0.66 1
Target:  5'- --gUGGAcUUGUCGUcAGU--GUGAGCg -3'
miRNA:   3'- uuaACCUuAACAGUA-UCAggUACUCG- -5'
16664 5' -44.2 NC_004156.1 + 208904 0.67 0.999999
Target:  5'- ---cGGAcgUacCGUAGcCCAUGAGCa -3'
miRNA:   3'- uuaaCCUuaAcaGUAUCaGGUACUCG- -5'
16664 5' -44.2 NC_004156.1 + 6782 0.67 0.999999
Target:  5'- uAUUGGAAUUGUCcacGUCCgGUGuguuGCu -3'
miRNA:   3'- uUAACCUUAACAGuauCAGG-UACu---CG- -5'
16664 5' -44.2 NC_004156.1 + 106697 0.68 0.999995
Target:  5'- ---cGGAAUcGUCuAUAGUCCA--AGCg -3'
miRNA:   3'- uuaaCCUUAaCAG-UAUCAGGUacUCG- -5'
16664 5' -44.2 NC_004156.1 + 117152 0.68 0.999995
Target:  5'- ---cGGua-UGUUGUAGUCCAUcGAGUa -3'
miRNA:   3'- uuaaCCuuaACAGUAUCAGGUA-CUCG- -5'
16664 5' -44.2 NC_004156.1 + 198065 0.69 0.999993
Target:  5'- ---aGGGAUUG-CGUcaAGUCaaCAUGAGCg -3'
miRNA:   3'- uuaaCCUUAACaGUA--UCAG--GUACUCG- -5'
16664 5' -44.2 NC_004156.1 + 135812 0.69 0.999993
Target:  5'- -cUUGGGAa-GUgGUAG-CCGUGGGCa -3'
miRNA:   3'- uuAACCUUaaCAgUAUCaGGUACUCG- -5'
16664 5' -44.2 NC_004156.1 + 226914 0.72 0.999491
Target:  5'- -uUUGGucaUGUC-UAGUCCAaGAGCa -3'
miRNA:   3'- uuAACCuuaACAGuAUCAGGUaCUCG- -5'
16664 5' -44.2 NC_004156.1 + 180930 0.76 0.989533
Target:  5'- ---aGGAAgaGUUGUGGUCgAUGAGCa -3'
miRNA:   3'- uuaaCCUUaaCAGUAUCAGgUACUCG- -5'
16664 5' -44.2 NC_004156.1 + 41363 1.13 0.03312
Target:  5'- gAAUUGGAAUUGUCAUAGUCCAUGAGCa -3'
miRNA:   3'- -UUAACCUUAACAGUAUCAGGUACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.