miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16666 3' -52.7 NC_004156.1 + 11200 0.66 0.99025
Target:  5'- aUCAAAAUCAaUACCAaUACCAaUGCCa -3'
miRNA:   3'- -AGUUUUGGUcGUGGUgGUGGUcACGG- -5'
16666 3' -52.7 NC_004156.1 + 124585 0.66 0.99025
Target:  5'- ----cACCGaCGCCGCCGCCGacGCCa -3'
miRNA:   3'- aguuuUGGUcGUGGUGGUGGUcaCGG- -5'
16666 3' -52.7 NC_004156.1 + 42611 0.66 0.989867
Target:  5'- aUCAucGACCAacucggccggauGCACCGuCCACCgauguguacaccaaGGUGCUg -3'
miRNA:   3'- -AGUu-UUGGU------------CGUGGU-GGUGG--------------UCACGG- -5'
16666 3' -52.7 NC_004156.1 + 224826 0.66 0.988928
Target:  5'- gCGAAGCCgaAGCgGCCAUUGCUcagccggugAGUGCCu -3'
miRNA:   3'- aGUUUUGG--UCG-UGGUGGUGG---------UCACGG- -5'
16666 3' -52.7 NC_004156.1 + 214348 0.66 0.988928
Target:  5'- ---cAAUCAGCACCGgCACaguGGUGgCCg -3'
miRNA:   3'- aguuUUGGUCGUGGUgGUGg--UCAC-GG- -5'
16666 3' -52.7 NC_004156.1 + 81515 0.66 0.988505
Target:  5'- -gAGAACCGaguguuugaagaucGCACCACCGCCA---CCg -3'
miRNA:   3'- agUUUUGGU--------------CGUGGUGGUGGUcacGG- -5'
16666 3' -52.7 NC_004156.1 + 206263 0.66 0.987469
Target:  5'- aUCuauACCGGCAUCG--AgCAGUGCCa -3'
miRNA:   3'- -AGuuuUGGUCGUGGUggUgGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 80496 0.66 0.987469
Target:  5'- cCGAcGCUGGCACUcaaucgGCUACUGGUGCg -3'
miRNA:   3'- aGUUuUGGUCGUGG------UGGUGGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 158465 0.66 0.987469
Target:  5'- gUCGAcGCCuGCGaugaaCACUGUCGGUGCCg -3'
miRNA:   3'- -AGUUuUGGuCGUg----GUGGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 143134 0.66 0.987316
Target:  5'- gCAAAGuacugacCCAGUGugucucugaguUCGCaCACCAGUGCCg -3'
miRNA:   3'- aGUUUU-------GGUCGU-----------GGUG-GUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 111578 0.67 0.985868
Target:  5'- gCAGA--CAGUACCACUugCAGUaGCa -3'
miRNA:   3'- aGUUUugGUCGUGGUGGugGUCA-CGg -5'
16666 3' -52.7 NC_004156.1 + 180649 0.67 0.985868
Target:  5'- cCAAGAgcCCAGaccgucgGCCACCacguaGCCGGUGCg -3'
miRNA:   3'- aGUUUU--GGUCg------UGGUGG-----UGGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 83286 0.67 0.984113
Target:  5'- aUCAuguCCcuGGCAUCGCCcuCCAGUGUUa -3'
miRNA:   3'- -AGUuuuGG--UCGUGGUGGu-GGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 131578 0.67 0.984113
Target:  5'- cUCGGAAUCcgAGU-CUAgauCCACCGGUGCCu -3'
miRNA:   3'- -AGUUUUGG--UCGuGGU---GGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 150727 0.67 0.984113
Target:  5'- cCGAuGugCAGCacaaguguccGCCgACCACCAcgcGUGCCg -3'
miRNA:   3'- aGUU-UugGUCG----------UGG-UGGUGGU---CACGG- -5'
16666 3' -52.7 NC_004156.1 + 149054 0.67 0.984113
Target:  5'- --uAGACCAuCACCAUCACCAucauuggauuGUGCa -3'
miRNA:   3'- aguUUUGGUcGUGGUGGUGGU----------CACGg -5'
16666 3' -52.7 NC_004156.1 + 191343 0.67 0.984113
Target:  5'- aCGuuuGGCCacAGUGCCACUACCAGUaGUg -3'
miRNA:   3'- aGUu--UUGG--UCGUGGUGGUGGUCA-CGg -5'
16666 3' -52.7 NC_004156.1 + 68495 0.67 0.982199
Target:  5'- cUCAGAcuaguGCCAGCAgUACCAgCAcUGCa -3'
miRNA:   3'- -AGUUU-----UGGUCGUgGUGGUgGUcACGg -5'
16666 3' -52.7 NC_004156.1 + 107084 0.67 0.980116
Target:  5'- aUCAGAuguacAUCGGUACCGCCAgUGGUGaCg -3'
miRNA:   3'- -AGUUU-----UGGUCGUGGUGGUgGUCACgG- -5'
16666 3' -52.7 NC_004156.1 + 3230 0.67 0.980116
Target:  5'- gUUAGAACuCuGC-CCauuGCCACCaaGGUGCCg -3'
miRNA:   3'- -AGUUUUG-GuCGuGG---UGGUGG--UCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.