miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16668 5' -57.4 NC_004156.1 + 57597 0.66 0.901014
Target:  5'- --uUGGCuGCcUCAGCCUCaGCUUUAc -3'
miRNA:   3'- accGCCGuCGaAGUCGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57507 0.66 0.901014
Target:  5'- --uUGGCuGCcUCAGCCUCaGCUUUAc -3'
miRNA:   3'- accGCCGuCGaAGUCGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57279 0.66 0.887975
Target:  5'- --uCGGCuGCUUCAGCaUCgGCUUUGc -3'
miRNA:   3'- accGCCGuCGAAGUCGgAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 210458 0.67 0.85929
Target:  5'- cGGCuccugcuGCGGCUgCGGCCUCUGCc--- -3'
miRNA:   3'- aCCGc------CGUCGAaGUCGGAGGCGaaau -5'
16668 5' -57.4 NC_004156.1 + 58283 0.68 0.774548
Target:  5'- uUGGCuucGGCuGCUucagcaUCAGCCUuUCGCUUUGc -3'
miRNA:   3'- -ACCG---CCGuCGA------AGUCGGA-GGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 58190 0.68 0.774548
Target:  5'- uUGGCuucGGCuGCUucagcaUCAGCCUuUCGCUUUGc -3'
miRNA:   3'- -ACCG---CCGuCGA------AGUCGGA-GGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 178411 0.69 0.746328
Target:  5'- cUGGCGGUGGCUcuUguGCCagaCCGCUc-- -3'
miRNA:   3'- -ACCGCCGUCGA--AguCGGa--GGCGAaau -5'
16668 5' -57.4 NC_004156.1 + 58250 0.71 0.596728
Target:  5'- uUGGCuucGGCuGCUUCAGCaUCgGCUUUAc -3'
miRNA:   3'- -ACCG---CCGuCGAAGUCGgAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 58035 0.72 0.556725
Target:  5'- -nGCGcuuuGCuGCUUCAGCCUCgGCUUUAc -3'
miRNA:   3'- acCGC----CGuCGAAGUCGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57828 0.73 0.498344
Target:  5'- uUGGCGGCuGCUUCAaUCUCaGCUUUAc -3'
miRNA:   3'- -ACCGCCGuCGAAGUcGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57624 0.73 0.487928
Target:  5'- uUGGCGGCuGCUUCAGCaucggccUUUCGUUUUGc -3'
miRNA:   3'- -ACCGCCGuCGAAGUCG-------GAGGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57681 0.74 0.464648
Target:  5'- uUGGCGGCugcuucagcaucGgccuuucguuuugcuGCUUCAGCCUCgGCUUUAc -3'
miRNA:   3'- -ACCGCCG------------U---------------CGAAGUCGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57376 0.79 0.248878
Target:  5'- cGGCuuugcguuuGGCuGCcUCAGCCUCCGCUUUGc -3'
miRNA:   3'- aCCG---------CCGuCGaAGUCGGAGGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57482 0.8 0.215466
Target:  5'- ----aGCAGCUUCAGCCUCCGCUUUu -3'
miRNA:   3'- accgcCGUCGAAGUCGGAGGCGAAAu -5'
16668 5' -57.4 NC_004156.1 + 58160 0.81 0.181418
Target:  5'- uUGGCuGCcGCcUCAGCCUCCGCUUUAc -3'
miRNA:   3'- -ACCGcCGuCGaAGUCGGAGGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57980 0.81 0.176962
Target:  5'- uUGGCuGCcGCUUCAGCCUCgGCUUUAc -3'
miRNA:   3'- -ACCGcCGuCGAAGUCGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57920 0.81 0.176962
Target:  5'- uUGGCuGCcGCUUCAGCCUCgGCUUUAc -3'
miRNA:   3'- -ACCGcCGuCGAAGUCGGAGgCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57572 0.82 0.160098
Target:  5'- ----aGCAGCUUCAGCCUCCGCUUUGc -3'
miRNA:   3'- accgcCGUCGAAGUCGGAGGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 58133 0.84 0.114885
Target:  5'- --uCGGCuGCUUCAGCCUCCGCUUUGc -3'
miRNA:   3'- accGCCGuCGAAGUCGGAGGCGAAAU- -5'
16668 5' -57.4 NC_004156.1 + 57858 0.87 0.077617
Target:  5'- uUGGCuucGGCuGCUUCAGCCUCCGCUUg- -3'
miRNA:   3'- -ACCG---CCGuCGAAGUCGGAGGCGAAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.