Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16669 | 5' | -53.1 | NC_004156.1 | + | 49813 | 0.68 | 0.952073 |
Target: 5'- gUAUCAGUGCUAGuaccAGC-AUCAGUACUAg -3' miRNA: 3'- -AUGGUCAUGGUC----UCGaUGGUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 165037 | 0.68 | 0.952073 |
Target: 5'- aGCCGGUACUAGAGuUUAUCAaGgcCCAa -3' miRNA: 3'- aUGGUCAUGGUCUC-GAUGGU-CauGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 171373 | 0.68 | 0.947861 |
Target: 5'- -uCCGGaACCAGAGCUuccACCGuaGCCAg -3' miRNA: 3'- auGGUCaUGGUCUCGA---UGGUcaUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 217287 | 0.68 | 0.947861 |
Target: 5'- cUACCAGUACuugaaugcaCAGAGCUACaacauuUGCCAa -3' miRNA: 3'- -AUGGUCAUG---------GUCUCGAUGguc---AUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 89580 | 0.68 | 0.94341 |
Target: 5'- -uCCGaUGCCAGAGCa--CGGUACCAu -3' miRNA: 3'- auGGUcAUGGUCUCGaugGUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 90272 | 0.69 | 0.928609 |
Target: 5'- gUGCCAGUGCCGuuGaCUAguaaCAGUGCCGa -3' miRNA: 3'- -AUGGUCAUGGUcuC-GAUg---GUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 227039 | 0.69 | 0.917522 |
Target: 5'- cACUAGUAUCAGAGUUGgCAcuuGUACUAg -3' miRNA: 3'- aUGGUCAUGGUCUCGAUgGU---CAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 164395 | 0.71 | 0.86365 |
Target: 5'- -uCCAGUGCCAGcacuGGUacccucuCCAGUACCAg -3' miRNA: 3'- auGGUCAUGGUC----UCGau-----GGUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 226002 | 0.71 | 0.847952 |
Target: 5'- cAUCAGaACUAGAGCUuacACCAGUAUUAa -3' miRNA: 3'- aUGGUCaUGGUCUCGA---UGGUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 206312 | 0.72 | 0.822923 |
Target: 5'- cACCGGUACCAG---UGCCGGUACUc -3' miRNA: 3'- aUGGUCAUGGUCucgAUGGUCAUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 95212 | 0.73 | 0.777782 |
Target: 5'- -uCUAGUACUcuGGaAGCUACCAGUGCUg -3' miRNA: 3'- auGGUCAUGG--UC-UCGAUGGUCAUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 164659 | 0.73 | 0.75873 |
Target: 5'- gUACUGGUACUGGAGagggUACCAGUGCUg -3' miRNA: 3'- -AUGGUCAUGGUCUCg---AUGGUCAUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 16203 | 0.74 | 0.728322 |
Target: 5'- gACCGGUGCCAGAuccauugGUUACuCGGUGCUg -3' miRNA: 3'- aUGGUCAUGGUCU-------CGAUG-GUCAUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 25895 | 0.74 | 0.719328 |
Target: 5'- cACCuAGUACCAGAcGCUGCCuacACCAg -3' miRNA: 3'- aUGG-UCAUGGUCU-CGAUGGucaUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 158535 | 0.74 | 0.699131 |
Target: 5'- uUACUAcUACUAGuGCUACCAGUACUg -3' miRNA: 3'- -AUGGUcAUGGUCuCGAUGGUCAUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 40793 | 0.75 | 0.668428 |
Target: 5'- gGCCAGaGCCAGAGCcagaGCCAGcGCCc -3' miRNA: 3'- aUGGUCaUGGUCUCGa---UGGUCaUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 171459 | 0.77 | 0.56539 |
Target: 5'- aACgCAGUGCCAcuGCUACCAGUGCUc -3' miRNA: 3'- aUG-GUCAUGGUcuCGAUGGUCAUGGu -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 45910 | 0.79 | 0.457513 |
Target: 5'- gGCCAGUGCCAa---UACCAGUACCAg -3' miRNA: 3'- aUGGUCAUGGUcucgAUGGUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 209420 | 0.8 | 0.378014 |
Target: 5'- gUACCAGaACCAGAGUcggUAUCGGUGCCAu -3' miRNA: 3'- -AUGGUCaUGGUCUCG---AUGGUCAUGGU- -5' |
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16669 | 5' | -53.1 | NC_004156.1 | + | 123041 | 0.83 | 0.294254 |
Target: 5'- gUGCCAGUACCAG---UACCAGUACCAa -3' miRNA: 3'- -AUGGUCAUGGUCucgAUGGUCAUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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