miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1667 3' -50.7 NC_001347.2 + 79855 0.66 0.998999
Target:  5'- cGUGgACGGUUggcCCGuGGGCCUGGGCc -3'
miRNA:   3'- cCGCaUGUUAGa--GGUcUUUGGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 158425 0.66 0.998999
Target:  5'- uGCGUACGcgUgggCUGGAaagccGugCUGGGCc -3'
miRNA:   3'- cCGCAUGUuaGa--GGUCU-----UugGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 93884 0.66 0.998999
Target:  5'- uGGaGUACugacggccGUCUCCAGAGaagccacaGCCgcuucGGGCa -3'
miRNA:   3'- -CCgCAUGu-------UAGAGGUCUU--------UGGa----CCCG- -5'
1667 3' -50.7 NC_001347.2 + 90606 0.66 0.998789
Target:  5'- cGGCGgACc----CCGGAGACCUGacGGCa -3'
miRNA:   3'- -CCGCaUGuuagaGGUCUUUGGAC--CCG- -5'
1667 3' -50.7 NC_001347.2 + 65936 0.66 0.998345
Target:  5'- cGCGUACGGUggacggguuucagCgUCCggccucggguugccuGGAcGCCUGGGCg -3'
miRNA:   3'- cCGCAUGUUA-------------G-AGG---------------UCUuUGGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 36410 0.66 0.998255
Target:  5'- uGGCGUGCuguUUUCCGuGuuGCCgacgGcGGCg -3'
miRNA:   3'- -CCGCAUGuu-AGAGGU-CuuUGGa---C-CCG- -5'
1667 3' -50.7 NC_001347.2 + 77626 0.66 0.998255
Target:  5'- aGCGUGCAAa---CGGGcGugCUGGGCg -3'
miRNA:   3'- cCGCAUGUUagagGUCU-UugGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 86234 0.66 0.998255
Target:  5'- cGGCc-ACGcgCUCCAG-GGCCUcGGCg -3'
miRNA:   3'- -CCGcaUGUuaGAGGUCuUUGGAcCCG- -5'
1667 3' -50.7 NC_001347.2 + 177247 0.66 0.998255
Target:  5'- cGCGUGCGAagaugaaaaacaUCUUaAGAAACC-GGGUc -3'
miRNA:   3'- cCGCAUGUU------------AGAGgUCUUUGGaCCCG- -5'
1667 3' -50.7 NC_001347.2 + 169138 0.67 0.997921
Target:  5'- cGCGcUGCAGUggCUGGA--CCUGGGCc -3'
miRNA:   3'- cCGC-AUGUUAgaGGUCUuuGGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 175093 0.67 0.99709
Target:  5'- aGGCGcACuuUCUggcgCgCGGAcuCCUGGGCu -3'
miRNA:   3'- -CCGCaUGuuAGA----G-GUCUuuGGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 134995 0.67 0.996582
Target:  5'- gGGaCGUGCGuUCgugCCGGGGAaaaaacccgaCUGGGCc -3'
miRNA:   3'- -CC-GCAUGUuAGa--GGUCUUUg---------GACCCG- -5'
1667 3' -50.7 NC_001347.2 + 59756 0.67 0.996582
Target:  5'- uGGUGcGCAucuUCUCCAccAACCaGGGUg -3'
miRNA:   3'- -CCGCaUGUu--AGAGGUcuUUGGaCCCG- -5'
1667 3' -50.7 NC_001347.2 + 30078 0.67 0.996003
Target:  5'- cGGUaUACGA-UUCCGGGAcGCCgaUGGGCg -3'
miRNA:   3'- -CCGcAUGUUaGAGGUCUU-UGG--ACCCG- -5'
1667 3' -50.7 NC_001347.2 + 189744 0.68 0.995345
Target:  5'- cGGCcaagaGUGCccccccGUCUCCGGugaaAGGCCgGGGCa -3'
miRNA:   3'- -CCG-----CAUGu-----UAGAGGUC----UUUGGaCCCG- -5'
1667 3' -50.7 NC_001347.2 + 7134 0.68 0.994603
Target:  5'- cGGCGUggACGGUCUCCGGuGACgUucGCa -3'
miRNA:   3'- -CCGCA--UGUUAGAGGUCuUUGgAccCG- -5'
1667 3' -50.7 NC_001347.2 + 54688 0.68 0.993767
Target:  5'- uGGCGauagACGA-CUuuGGuGACUUGGGCg -3'
miRNA:   3'- -CCGCa---UGUUaGAggUCuUUGGACCCG- -5'
1667 3' -50.7 NC_001347.2 + 161329 0.68 0.991784
Target:  5'- cGCcUGCGGUUUCCGGGggU-UGGGCa -3'
miRNA:   3'- cCGcAUGUUAGAGGUCUuuGgACCCG- -5'
1667 3' -50.7 NC_001347.2 + 194176 0.69 0.990621
Target:  5'- aGUGUACAcgCgcCCAGAAAUa-GGGCg -3'
miRNA:   3'- cCGCAUGUuaGa-GGUCUUUGgaCCCG- -5'
1667 3' -50.7 NC_001347.2 + 147210 0.69 0.989333
Target:  5'- uGGCGca-AAUCg-CAGAAGCCUGGuGUg -3'
miRNA:   3'- -CCGCaugUUAGagGUCUUUGGACC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.