miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1667 5' -53 NC_001347.2 + 180492 0.66 0.992493
Target:  5'- gGGCCCuucguGGGCAAGAuGGGcACCGucuguUCGCa -3'
miRNA:   3'- gUCGGG-----UCCGUUUU-UUC-UGGC-----AGCGc -5'
1667 5' -53 NC_001347.2 + 20434 0.66 0.992493
Target:  5'- -cGCCgCAgcGGCuuugugccGAGACCGUCGCc -3'
miRNA:   3'- guCGG-GU--CCGuuuu----UUCUGGCAGCGc -5'
1667 5' -53 NC_001347.2 + 135435 0.66 0.992493
Target:  5'- gAGCCCAaccGGagccgcCGAGAGGGAgCCGcCGCGa -3'
miRNA:   3'- gUCGGGU---CC------GUUUUUUCU-GGCaGCGC- -5'
1667 5' -53 NC_001347.2 + 209040 0.66 0.990956
Target:  5'- gAGCCCGGGUuccgcucGCgGUUGCGg -3'
miRNA:   3'- gUCGGGUCCGuuuuuucUGgCAGCGC- -5'
1667 5' -53 NC_001347.2 + 14095 0.66 0.990225
Target:  5'- uCAGaCCgAGGCAAAucaa--CGUCGCGa -3'
miRNA:   3'- -GUC-GGgUCCGUUUuuucugGCAGCGC- -5'
1667 5' -53 NC_001347.2 + 69376 0.66 0.990225
Target:  5'- --aCCCGacacGCGgaaaAGAAAGACCGUCGCa -3'
miRNA:   3'- gucGGGUc---CGU----UUUUUCUGGCAGCGc -5'
1667 5' -53 NC_001347.2 + 200083 0.66 0.988906
Target:  5'- gAGaCCCGGGCGGGacguuauauaguGAGGGCCGgcuccgGCGg -3'
miRNA:   3'- gUC-GGGUCCGUUU------------UUUCUGGCag----CGC- -5'
1667 5' -53 NC_001347.2 + 80692 0.66 0.987452
Target:  5'- cCGGCCCAGGaCAuGAcccacggccGAGAgCCaGUCGCc -3'
miRNA:   3'- -GUCGGGUCC-GUuUU---------UUCU-GG-CAGCGc -5'
1667 5' -53 NC_001347.2 + 228580 0.66 0.987452
Target:  5'- gCAGCguacgacguuCCAGuCAGc-GAGGCCGUCGCGu -3'
miRNA:   3'- -GUCG----------GGUCcGUUuuUUCUGGCAGCGC- -5'
1667 5' -53 NC_001347.2 + 170760 0.66 0.985856
Target:  5'- gAGCCCGGGCGGcgu-GuuuuugcgcaucGCCGUgGCGu -3'
miRNA:   3'- gUCGGGUCCGUUuuuuC------------UGGCAgCGC- -5'
1667 5' -53 NC_001347.2 + 109573 0.66 0.985856
Target:  5'- -cGCCUuaAGGCcGAGuccACCGUCGCGc -3'
miRNA:   3'- guCGGG--UCCGuUUUuucUGGCAGCGC- -5'
1667 5' -53 NC_001347.2 + 161132 0.66 0.985856
Target:  5'- aAGCaUAGGCGAcgcAGGCgGUCGCGc -3'
miRNA:   3'- gUCGgGUCCGUUuuuUCUGgCAGCGC- -5'
1667 5' -53 NC_001347.2 + 167199 0.66 0.985856
Target:  5'- aAGCggAGGCAAAGgcGAGGCCG-CGCc -3'
miRNA:   3'- gUCGggUCCGUUUU--UUCUGGCaGCGc -5'
1667 5' -53 NC_001347.2 + 98896 0.67 0.984109
Target:  5'- cCAGCCCAuGCAcguccagcGAGGAGuuGCUGUUGCa -3'
miRNA:   3'- -GUCGGGUcCGU--------UUUUUC--UGGCAGCGc -5'
1667 5' -53 NC_001347.2 + 136013 0.67 0.984109
Target:  5'- cCGGCCgAGGUccGGAGcGGGCCG-CGCc -3'
miRNA:   3'- -GUCGGgUCCG--UUUUuUCUGGCaGCGc -5'
1667 5' -53 NC_001347.2 + 85079 0.67 0.984109
Target:  5'- gAGaCCAGGUAGAcgguAGGCagGUCGCGg -3'
miRNA:   3'- gUCgGGUCCGUUUuu--UCUGg-CAGCGC- -5'
1667 5' -53 NC_001347.2 + 5817 0.67 0.983554
Target:  5'- uCGGCUCGGGUcgugggucgucgcuGAAAAuGGCUGUCGUa -3'
miRNA:   3'- -GUCGGGUCCG--------------UUUUUuCUGGCAGCGc -5'
1667 5' -53 NC_001347.2 + 81264 0.67 0.981598
Target:  5'- gUAGCCCAGcagacucuggaucuGCcAGAAAG-CgCGUCGCGa -3'
miRNA:   3'- -GUCGGGUC--------------CGuUUUUUCuG-GCAGCGC- -5'
1667 5' -53 NC_001347.2 + 216999 0.67 0.981598
Target:  5'- cCAGCCacaCAGGguGAcguuuaccauggccGAAGACUcgGUCGCGa -3'
miRNA:   3'- -GUCGG---GUCCguUU--------------UUUCUGG--CAGCGC- -5'
1667 5' -53 NC_001347.2 + 68162 0.67 0.980128
Target:  5'- --uCCUccGC-AGAAGGGCCGUCGCGa -3'
miRNA:   3'- gucGGGucCGuUUUUUCUGGCAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.