miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16671 3' -41.1 NC_004156.1 + 22704 0.67 1
Target:  5'- --gCUAGA-ACUCAGAGUAUAGAg-- -3'
miRNA:   3'- uuaGGUUUgUGAGUCUCAUAUUUaua -5'
16671 3' -41.1 NC_004156.1 + 153351 0.68 1
Target:  5'- gGAUCC----GCUCAGAGUGUGGGc-- -3'
miRNA:   3'- -UUAGGuuugUGAGUCUCAUAUUUaua -5'
16671 3' -41.1 NC_004156.1 + 219759 0.68 1
Target:  5'- -uUCCAAA-AUUCAGAGUAUAAu--- -3'
miRNA:   3'- uuAGGUUUgUGAGUCUCAUAUUuaua -5'
16671 3' -41.1 NC_004156.1 + 27937 0.67 1
Target:  5'- cAUCCAAACAaucCAGAuguuGUAUGAAUAc -3'
miRNA:   3'- uUAGGUUUGUga-GUCU----CAUAUUUAUa -5'
16671 3' -41.1 NC_004156.1 + 35328 0.68 1
Target:  5'- uGUCUAG--ACUCGGAGUGUGAAc-- -3'
miRNA:   3'- uUAGGUUugUGAGUCUCAUAUUUaua -5'
16671 3' -41.1 NC_004156.1 + 22078 0.69 1
Target:  5'- uGUCUGAGCAacaUCAGAGUuUGAGUGc -3'
miRNA:   3'- uUAGGUUUGUg--AGUCUCAuAUUUAUa -5'
16671 3' -41.1 NC_004156.1 + 109897 0.71 0.999999
Target:  5'- -cUCCAGAUggGCUUAGAGUugGUGGAUAc -3'
miRNA:   3'- uuAGGUUUG--UGAGUCUCA--UAUUUAUa -5'
16671 3' -41.1 NC_004156.1 + 115941 0.72 0.999993
Target:  5'- --aCCGAGCGCUCAGuacGUGUAcGAUGUg -3'
miRNA:   3'- uuaGGUUUGUGAGUCu--CAUAU-UUAUA- -5'
16671 3' -41.1 NC_004156.1 + 68028 0.73 0.999963
Target:  5'- --aUCGGAUACUCAGAGUGUcuAUAUu -3'
miRNA:   3'- uuaGGUUUGUGAGUCUCAUAuuUAUA- -5'
16671 3' -41.1 NC_004156.1 + 30525 0.75 0.999651
Target:  5'- aAAUCCAAGCAucCUCAGAGUAa------ -3'
miRNA:   3'- -UUAGGUUUGU--GAGUCUCAUauuuaua -5'
16671 3' -41.1 NC_004156.1 + 67514 0.78 0.997081
Target:  5'- --aCCAAuCGCUCAGAGUGUuuGUGUg -3'
miRNA:   3'- uuaGGUUuGUGAGUCUCAUAuuUAUA- -5'
16671 3' -41.1 NC_004156.1 + 72781 1.04 0.184676
Target:  5'- gAAUCCAAACACUCAGAGUAUAAAUAUc -3'
miRNA:   3'- -UUAGGUUUGUGAGUCUCAUAUUUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.