miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16673 5' -45.8 NC_004156.1 + 19997 0.66 0.999999
Target:  5'- -aCACCGAUaccGACAgcgaugcccgUGUACCGAUUu -3'
miRNA:   3'- ggGUGGUUAauaCUGU----------ACAUGGCUAA- -5'
16673 5' -45.8 NC_004156.1 + 186140 0.66 0.999999
Target:  5'- aCCCAUCAAUc-UGGCcAUGUACuCGGa- -3'
miRNA:   3'- -GGGUGGUUAauACUG-UACAUG-GCUaa -5'
16673 5' -45.8 NC_004156.1 + 107067 0.66 0.999998
Target:  5'- aCCGCCAGUgGUGACgGUGUaGCCu--- -3'
miRNA:   3'- gGGUGGUUAaUACUG-UACA-UGGcuaa -5'
16673 5' -45.8 NC_004156.1 + 214097 0.67 0.999995
Target:  5'- gCCACCAc-UGUG-CcgGUGCUGAUUg -3'
miRNA:   3'- gGGUGGUuaAUACuGuaCAUGGCUAA- -5'
16673 5' -45.8 NC_004156.1 + 36329 0.67 0.999993
Target:  5'- aCCGCCGu---UGGCcaguuuccAUGUGCCGGUa -3'
miRNA:   3'- gGGUGGUuaauACUG--------UACAUGGCUAa -5'
16673 5' -45.8 NC_004156.1 + 127351 0.67 0.999992
Target:  5'- gCCAauCCGAUugccuacUAUGACGUGaACCGAg- -3'
miRNA:   3'- gGGU--GGUUA-------AUACUGUACaUGGCUaa -5'
16673 5' -45.8 NC_004156.1 + 142621 0.67 0.99999
Target:  5'- gCCaCACCGAUUGUGAuuccCAUGUgucguaccguAUCGAUa -3'
miRNA:   3'- -GG-GUGGUUAAUACU----GUACA----------UGGCUAa -5'
16673 5' -45.8 NC_004156.1 + 135382 0.67 0.999986
Target:  5'- gUCCACCGuaaauggUAUGGCAuUGgugGCCGAc- -3'
miRNA:   3'- -GGGUGGUua-----AUACUGU-ACa--UGGCUaa -5'
16673 5' -45.8 NC_004156.1 + 80665 0.67 0.999985
Target:  5'- aCCCACCGAUga-GACGaguucauUGUACCuGAc- -3'
miRNA:   3'- -GGGUGGUUAauaCUGU-------ACAUGG-CUaa -5'
16673 5' -45.8 NC_004156.1 + 209854 0.68 0.99998
Target:  5'- cCCCACgAAUgguu-CGUGUGCCGGc- -3'
miRNA:   3'- -GGGUGgUUAauacuGUACAUGGCUaa -5'
16673 5' -45.8 NC_004156.1 + 203876 0.68 0.999963
Target:  5'- aCCugUAcUUGUGcACAUGUAUCGAc- -3'
miRNA:   3'- gGGugGUuAAUAC-UGUACAUGGCUaa -5'
16673 5' -45.8 NC_004156.1 + 126156 0.69 0.999914
Target:  5'- uCCCAUCAug---GACGacUGUACCGAc- -3'
miRNA:   3'- -GGGUGGUuaauaCUGU--ACAUGGCUaa -5'
16673 5' -45.8 NC_004156.1 + 216882 0.7 0.999393
Target:  5'- gCCACCGAcUAUGGugcCA-GUACCGAUg -3'
miRNA:   3'- gGGUGGUUaAUACU---GUaCAUGGCUAa -5'
16673 5' -45.8 NC_004156.1 + 62012 0.71 0.999076
Target:  5'- -gCGCUAAcgUAcGACAUGUACCGGUa -3'
miRNA:   3'- ggGUGGUUa-AUaCUGUACAUGGCUAa -5'
16673 5' -45.8 NC_004156.1 + 151398 0.71 0.998626
Target:  5'- gCCACCAAUguacacgGACGUGUACaaGAUUg -3'
miRNA:   3'- gGGUGGUUAaua----CUGUACAUGg-CUAA- -5'
16673 5' -45.8 NC_004156.1 + 66144 0.71 0.998626
Target:  5'- aCUACUAug-GUGACA-GUACCGAUg -3'
miRNA:   3'- gGGUGGUuaaUACUGUaCAUGGCUAa -5'
16673 5' -45.8 NC_004156.1 + 191471 0.73 0.995347
Target:  5'- aCCACCAGUUugcGUuGCAUGUugCGAg- -3'
miRNA:   3'- gGGUGGUUAA---UAcUGUACAugGCUaa -5'
16673 5' -45.8 NC_004156.1 + 211113 0.74 0.991582
Target:  5'- aCCACgGAgacgAUGACAUG-ACCGAUg -3'
miRNA:   3'- gGGUGgUUaa--UACUGUACaUGGCUAa -5'
16673 5' -45.8 NC_004156.1 + 129554 0.81 0.838013
Target:  5'- aCCACCAAUauUGGCAUGcugACCGAUUg -3'
miRNA:   3'- gGGUGGUUAauACUGUACa--UGGCUAA- -5'
16673 5' -45.8 NC_004156.1 + 80444 1.09 0.041012
Target:  5'- uCCCACCAAUUAUGACAUGUACCGAUUg -3'
miRNA:   3'- -GGGUGGUUAAUACUGUACAUGGCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.