Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16674 | 5' | -50.6 | NC_004156.1 | + | 113976 | 0.69 | 0.982254 |
Target: 5'- gAGUGuGCCAAACa---CAUCGUCAACc -3' miRNA: 3'- -UCAC-CGGUUUGacacGUAGCAGUUGc -5' |
|||||||
16674 | 5' | -50.6 | NC_004156.1 | + | 96175 | 0.71 | 0.956134 |
Target: 5'- gAGUGcugaaacacuGCCAGAUUG-GCAUCGUCGuCGg -3' miRNA: 3'- -UCAC----------CGGUUUGACaCGUAGCAGUuGC- -5' |
|||||||
16674 | 5' | -50.6 | NC_004156.1 | + | 19495 | 0.76 | 0.767382 |
Target: 5'- cGUGcCCAGACUGcGCAcCGUCAACGg -3' miRNA: 3'- uCACcGGUUUGACaCGUaGCAGUUGC- -5' |
|||||||
16674 | 5' | -50.6 | NC_004156.1 | + | 45280 | 0.66 | 0.998773 |
Target: 5'- --aGcGCCAAAgUGUGCAUCGUa---- -3' miRNA: 3'- ucaC-CGGUUUgACACGUAGCAguugc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home