miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16677 3' -51.1 NC_004156.1 + 192937 0.66 0.997885
Target:  5'- uGGCGGcagCGCucACCACuCugGGUCGCa -3'
miRNA:   3'- uUCGCUa--GCGu-UGGUG-GugUUAGUGg -5'
16677 3' -51.1 NC_004156.1 + 180652 0.66 0.997034
Target:  5'- aGAGCccaGAcCGuCGGCCACCACGua-GCCg -3'
miRNA:   3'- -UUCG---CUaGC-GUUGGUGGUGUuagUGG- -5'
16677 3' -51.1 NC_004156.1 + 178412 0.66 0.995916
Target:  5'- uGGCGGUgGCucuuguGCCagACCGCucaguUCACCg -3'
miRNA:   3'- uUCGCUAgCGu-----UGG--UGGUGuu---AGUGG- -5'
16677 3' -51.1 NC_004156.1 + 129416 0.66 0.995916
Target:  5'- cGAGCccuGUUGCAcauGCCACCgGCAAagGCCa -3'
miRNA:   3'- -UUCGc--UAGCGU---UGGUGG-UGUUagUGG- -5'
16677 3' -51.1 NC_004156.1 + 92415 0.66 0.995916
Target:  5'- -uGUGAUCG-AGCCaaauACCACAAUCAg- -3'
miRNA:   3'- uuCGCUAGCgUUGG----UGGUGUUAGUgg -5'
16677 3' -51.1 NC_004156.1 + 106339 0.67 0.99524
Target:  5'- -uGCGAugauaaacUCGUuACCGCCAUAguAUCGCUu -3'
miRNA:   3'- uuCGCU--------AGCGuUGGUGGUGU--UAGUGG- -5'
16677 3' -51.1 NC_004156.1 + 7470 0.67 0.99524
Target:  5'- cAGUGGUCGUggUCACCAUcaAGUCuuGCUc -3'
miRNA:   3'- uUCGCUAGCGuuGGUGGUG--UUAG--UGG- -5'
16677 3' -51.1 NC_004156.1 + 180262 0.67 0.994475
Target:  5'- aGAGCcuGGUCacuuuGgGAUCACCGCAAUCGCa -3'
miRNA:   3'- -UUCG--CUAG-----CgUUGGUGGUGUUAGUGg -5'
16677 3' -51.1 NC_004156.1 + 106568 0.67 0.993615
Target:  5'- -uGUGAcaUUGUAACCACUACAAcgCACa -3'
miRNA:   3'- uuCGCU--AGCGUUGGUGGUGUUa-GUGg -5'
16677 3' -51.1 NC_004156.1 + 85819 0.67 0.991572
Target:  5'- uAGCGGUCguuggagcacuuGCAACgCAUCGCAGUaaaCGCCu -3'
miRNA:   3'- uUCGCUAG------------CGUUG-GUGGUGUUA---GUGG- -5'
16677 3' -51.1 NC_004156.1 + 149293 0.68 0.990246
Target:  5'- uGGUGAUgGUcuACCGCCGuucauaaucgaucCAGUCACCg -3'
miRNA:   3'- uUCGCUAgCGu-UGGUGGU-------------GUUAGUGG- -5'
16677 3' -51.1 NC_004156.1 + 76036 0.68 0.987576
Target:  5'- -cGCGuacgauUCGU--CCACCGCAuUCACCc -3'
miRNA:   3'- uuCGCu-----AGCGuuGGUGGUGUuAGUGG- -5'
16677 3' -51.1 NC_004156.1 + 193181 0.68 0.987576
Target:  5'- uGGUGAgCGCuGCCGCCACcAGcUACCg -3'
miRNA:   3'- uUCGCUaGCGuUGGUGGUG-UUaGUGG- -5'
16677 3' -51.1 NC_004156.1 + 81532 0.68 0.987576
Target:  5'- ---aGAUCGC-ACCACCGC---CACCg -3'
miRNA:   3'- uucgCUAGCGuUGGUGGUGuuaGUGG- -5'
16677 3' -51.1 NC_004156.1 + 41385 0.68 0.985961
Target:  5'- uGAGCaccUCuGCAACCACCACGuuaaacUCAUCg -3'
miRNA:   3'- -UUCGcu-AG-CGUUGGUGGUGUu-----AGUGG- -5'
16677 3' -51.1 NC_004156.1 + 218446 0.69 0.980146
Target:  5'- aAAGUG-UCGCAAaCGCCACAuaaaggagCACCa -3'
miRNA:   3'- -UUCGCuAGCGUUgGUGGUGUua------GUGG- -5'
16677 3' -51.1 NC_004156.1 + 178616 0.69 0.980146
Target:  5'- uGGGC--UCGacaaaGGCCACCGCAAUCAUg -3'
miRNA:   3'- -UUCGcuAGCg----UUGGUGGUGUUAGUGg -5'
16677 3' -51.1 NC_004156.1 + 77082 0.7 0.966731
Target:  5'- --aCGAUCGCAGCCaACUACAccggugagaGUCuACCg -3'
miRNA:   3'- uucGCUAGCGUUGG-UGGUGU---------UAG-UGG- -5'
16677 3' -51.1 NC_004156.1 + 223113 0.7 0.959893
Target:  5'- --uUGAUgGUuuagAACCAUCACAGUCACCc -3'
miRNA:   3'- uucGCUAgCG----UUGGUGGUGUUAGUGG- -5'
16677 3' -51.1 NC_004156.1 + 150714 0.7 0.956134
Target:  5'- cAAGUGucCGcCGACCACCACGcgUGCCg -3'
miRNA:   3'- -UUCGCuaGC-GUUGGUGGUGUuaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.