miRNA: 3'- -UGACAaCUG-----GCUACGGCC---ACGGCUcu -5'
miRNA: 3'- ugacaacUGGCUACGGCcACGGCUCu -5'
miRNA: 3'- -UGACAACUGGCUacgGCCACG-GCUCu -5'
miRNA: 3'- ugACAACuGGCUACGG-CCACGGCUcu -5'
miRNA: 3'- -UGACAACUGGCUACGGCCACGGCUCU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16678 | 3' | -56.2 | NC_004156.1 | + | 122833 | 0.67 | 0.922743 |
|
Target: 5'- uACUGUaGACguuucUGAUGCCGGagaUGCCGGu- -3' miRNA: 3'- -UGACAaCUG-----GCUACGGCC---ACGGCUcu -5' |
|||||||
| 16678 | 3' | -56.2 | NC_004156.1 | + | 54584 | 0.67 | 0.905666 |
|
Target: 5'- ------uACCGAUGCCGaUGCCGAGu -3' miRNA: 3'- ugacaacUGGCUACGGCcACGGCUCu -5' |
|||||||
| 16678 | 3' | -56.2 | NC_004156.1 | + | 101048 | 0.68 | 0.89317 |
|
Target: 5'- cACUGUUGACUGAa--UGGUGCuCGGGu -3' miRNA: 3'- -UGACAACUGGCUacgGCCACG-GCUCu -5' |
|||||||
| 16678 | 3' | -56.2 | NC_004156.1 | + | 49840 | 0.74 | 0.589789 |
|
Target: 5'- -gUGUUG-CCGAUGCCuGGUGUCGAa- -3' miRNA: 3'- ugACAACuGGCUACGG-CCACGGCUcu -5' |
|||||||
| 16678 | 3' | -56.2 | NC_004156.1 | + | 109157 | 1.09 | 0.004416 |
|
Target: 5'- gACUGUUGACCGAUGCCGGUGCCGAGAg -3' miRNA: 3'- -UGACAACUGGCUACGGCCACGGCUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home