Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16678 | 5' | -53.1 | NC_004156.1 | + | 1357 | 0.66 | 0.991928 |
Target: 5'- cGUCaUCGGUuUCGAU-ACCgcuacguuuaggaguGCCGUCCg -3' miRNA: 3'- uCAG-AGCCGuAGCUAcUGG---------------UGGUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 15560 | 0.67 | 0.980421 |
Target: 5'- cGUCUCGGgAUCGgcGAC-GCCAcUCUu -3' miRNA: 3'- uCAGAGCCgUAGCuaCUGgUGGU-AGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 18287 | 0.73 | 0.804818 |
Target: 5'- ---aUCGGCAUCGGUGGCCGCUc--- -3' miRNA: 3'- ucagAGCCGUAGCUACUGGUGGuagg -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 25967 | 0.68 | 0.973279 |
Target: 5'- cAGUCUCGGCuUUuuauagugcgGAUGGCCcCCAcUCUg -3' miRNA: 3'- -UCAGAGCCGuAG----------CUACUGGuGGU-AGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 39772 | 0.66 | 0.989024 |
Target: 5'- uGUCUgGGCGauuUC-AUGGCCGuuAUCCu -3' miRNA: 3'- uCAGAgCCGU---AGcUACUGGUggUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 54767 | 0.77 | 0.620823 |
Target: 5'- --cCUCGGCAUCGGU-AUCugCAUCCa -3' miRNA: 3'- ucaGAGCCGUAGCUAcUGGugGUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 54823 | 0.66 | 0.992549 |
Target: 5'- ---aUCGGCAUCGGUaucGGCCucuaCAUCUg -3' miRNA: 3'- ucagAGCCGUAGCUA---CUGGug--GUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 62539 | 0.74 | 0.777905 |
Target: 5'- ---gUCGGCAUCGucGACCACCA-CCg -3' miRNA: 3'- ucagAGCCGUAGCuaCUGGUGGUaGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 64572 | 0.68 | 0.975842 |
Target: 5'- uGGUCUCuucgGGC-UCGAgcuuuaCACCGUCCa -3' miRNA: 3'- -UCAGAG----CCGuAGCUacug--GUGGUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 71371 | 0.7 | 0.915107 |
Target: 5'- uAGUUuaUCGGCcagAUUGGUGGCCucAUCGUCCa -3' miRNA: 3'- -UCAG--AGCCG---UAGCUACUGG--UGGUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 76753 | 0.69 | 0.961053 |
Target: 5'- cGUCcuugcCGGCAaUGAUGGCU-CCGUCCa -3' miRNA: 3'- uCAGa----GCCGUaGCUACUGGuGGUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 79556 | 0.67 | 0.987597 |
Target: 5'- --aCUCGGUAcCGAUGGCCagauGCCgAUUCa -3' miRNA: 3'- ucaGAGCCGUaGCUACUGG----UGG-UAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 85634 | 0.69 | 0.953679 |
Target: 5'- aAGUagUCGGCAUCGGUGA-UGCgCAUCUg -3' miRNA: 3'- -UCAg-AGCCGUAGCUACUgGUG-GUAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 89415 | 0.67 | 0.982451 |
Target: 5'- uGGUgaCUCGGCA-CGAucucuuguUGACCAUCGUggCCa -3' miRNA: 3'- -UCA--GAGCCGUaGCU--------ACUGGUGGUA--GG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 91777 | 0.67 | 0.97822 |
Target: 5'- cGGaCUCGGaGUCGGUGGCguCCAggaugCCa -3' miRNA: 3'- -UCaGAGCCgUAGCUACUGguGGUa----GG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 95669 | 0.67 | 0.987447 |
Target: 5'- -aUCUgGGCAcguacacUCGGUGuCCACCGaaugcguuUCCg -3' miRNA: 3'- ucAGAgCCGU-------AGCUACuGGUGGU--------AGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 95717 | 0.68 | 0.973279 |
Target: 5'- uAGUUUgGGCcgaAUCGGUGACCGuCUcgaAUCCc -3' miRNA: 3'- -UCAGAgCCG---UAGCUACUGGU-GG---UAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 102640 | 0.66 | 0.992549 |
Target: 5'- --cUUCGGCGUCaauguGAaucUGACCACCucugCCg -3' miRNA: 3'- ucaGAGCCGUAG-----CU---ACUGGUGGua--GG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 104429 | 0.66 | 0.992549 |
Target: 5'- gAGUCU--GCAUCGGUggGAUCACUcuuGUCCa -3' miRNA: 3'- -UCAGAgcCGUAGCUA--CUGGUGG---UAGG- -5' |
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16678 | 5' | -53.1 | NC_004156.1 | + | 109193 | 1.13 | 0.004969 |
Target: 5'- cAGUCUCGGCAUCGAUGACCACCAUCCg -3' miRNA: 3'- -UCAGAGCCGUAGCUACUGGUGGUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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