miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16678 5' -53.1 NC_004156.1 + 169642 0.68 0.973279
Target:  5'- uGGUCUCGcucauaaaacGCAUCGAcUGuuUugCAUCCg -3'
miRNA:   3'- -UCAGAGC----------CGUAGCU-ACugGugGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 214161 0.68 0.970525
Target:  5'- cGUCUCGGC-UCGGUGcacgguACgCACCAguacUCUg -3'
miRNA:   3'- uCAGAGCCGuAGCUAC------UG-GUGGU----AGG- -5'
16678 5' -53.1 NC_004156.1 + 76753 0.69 0.961053
Target:  5'- cGUCcuugcCGGCAaUGAUGGCU-CCGUCCa -3'
miRNA:   3'- uCAGa----GCCGUaGCUACUGGuGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 164699 0.69 0.957475
Target:  5'- cGUCgccucCGGCAccgCGAgccACCAUCAUCCg -3'
miRNA:   3'- uCAGa----GCCGUa--GCUac-UGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 85634 0.69 0.953679
Target:  5'- aAGUagUCGGCAUCGGUGA-UGCgCAUCUg -3'
miRNA:   3'- -UCAg-AGCCGUAGCUACUgGUG-GUAGG- -5'
16678 5' -53.1 NC_004156.1 + 127640 0.69 0.945416
Target:  5'- uGGUCUUGGCcacauuGUUGAUGACgACCcgAUUCu -3'
miRNA:   3'- -UCAGAGCCG------UAGCUACUGgUGG--UAGG- -5'
16678 5' -53.1 NC_004156.1 + 123185 0.7 0.931306
Target:  5'- cGUCUgaagcuacacCGGCAUCGuccgagacACCGCCAUCUg -3'
miRNA:   3'- uCAGA----------GCCGUAGCuac-----UGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 179886 0.7 0.929781
Target:  5'- uGGUaUCGGCAUCGAUGccgucuuggaucCCACCAagauugaUCCu -3'
miRNA:   3'- -UCAgAGCCGUAGCUACu-----------GGUGGU-------AGG- -5'
16678 5' -53.1 NC_004156.1 + 175275 0.7 0.915107
Target:  5'- cAGUCUC-GCAcCG-UGACCagACCGUCCu -3'
miRNA:   3'- -UCAGAGcCGUaGCuACUGG--UGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 71371 0.7 0.915107
Target:  5'- uAGUUuaUCGGCcagAUUGGUGGCCucAUCGUCCa -3'
miRNA:   3'- -UCAG--AGCCG---UAGCUACUGG--UGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 127809 0.73 0.839343
Target:  5'- cGUaCUCGGUGUCGGaggguagagugugccGAUCGCCAUCCa -3'
miRNA:   3'- uCA-GAGCCGUAGCUa--------------CUGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 152902 0.73 0.804818
Target:  5'- --gCUgGGCAUCGGUGA-CACCAugUCCa -3'
miRNA:   3'- ucaGAgCCGUAGCUACUgGUGGU--AGG- -5'
16678 5' -53.1 NC_004156.1 + 18287 0.73 0.804818
Target:  5'- ---aUCGGCAUCGGUGGCCGCUc--- -3'
miRNA:   3'- ucagAGCCGUAGCUACUGGUGGuagg -5'
16678 5' -53.1 NC_004156.1 + 62539 0.74 0.777905
Target:  5'- ---gUCGGCAUCGucGACCACCA-CCg -3'
miRNA:   3'- ucagAGCCGUAGCuaCUGGUGGUaGG- -5'
16678 5' -53.1 NC_004156.1 + 169311 0.75 0.720885
Target:  5'- cGGUCUCGGCAUCGGUguacGugCACaUGUCg -3'
miRNA:   3'- -UCAGAGCCGUAGCUA----CugGUG-GUAGg -5'
16678 5' -53.1 NC_004156.1 + 54767 0.77 0.620823
Target:  5'- --cCUCGGCAUCGGU-AUCugCAUCCa -3'
miRNA:   3'- ucaGAGCCGUAGCUAcUGGugGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 109193 1.13 0.004969
Target:  5'- cAGUCUCGGCAUCGAUGACCACCAUCCg -3'
miRNA:   3'- -UCAGAGCCGUAGCUACUGGUGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.