miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16679 3' -51.3 NC_004156.1 + 15996 0.66 0.994802
Target:  5'- -cGUUGGCCAACAUGuuu--ACCUg- -3'
miRNA:   3'- caCGACCGGUUGUACuaguuUGGGuu -5'
16679 3' -51.3 NC_004156.1 + 36988 0.66 0.993967
Target:  5'- uUGgUGGCCAACAUuAUCAuACgCAAc -3'
miRNA:   3'- cACgACCGGUUGUAcUAGUuUGgGUU- -5'
16679 3' -51.3 NC_004156.1 + 38824 0.66 0.993415
Target:  5'- -cGCUGGCCAaguucccaaagccuaGCGUGGaaccACCCAAg -3'
miRNA:   3'- caCGACCGGU---------------UGUACUaguuUGGGUU- -5'
16679 3' -51.3 NC_004156.1 + 15659 0.66 0.993026
Target:  5'- cGUGCagGGUCAACGUaaaGAguucguaCAAGCCCGAg -3'
miRNA:   3'- -CACGa-CCGGUUGUA---CUa------GUUUGGGUU- -5'
16679 3' -51.3 NC_004156.1 + 64300 0.66 0.993026
Target:  5'- ---gUGGCCAgcuACAUGGacgguguaaagcUCGAGCCCGAa -3'
miRNA:   3'- cacgACCGGU---UGUACU------------AGUUUGGGUU- -5'
16679 3' -51.3 NC_004156.1 + 1659 0.66 0.993026
Target:  5'- -aGCUcaGGaugCGACuGUGAUCAAACCCAu -3'
miRNA:   3'- caCGA--CCg--GUUG-UACUAGUUUGGGUu -5'
16679 3' -51.3 NC_004156.1 + 123113 0.68 0.980651
Target:  5'- -aGCgUGGUCAGCAUGAUUAGAUUgAAu -3'
miRNA:   3'- caCG-ACCGGUUGUACUAGUUUGGgUU- -5'
16679 3' -51.3 NC_004156.1 + 20554 0.68 0.977638
Target:  5'- cGUGUcgaggaacgcuacaUGGCCAaguGCAaGAUUAGGCCCAc -3'
miRNA:   3'- -CACG--------------ACCGGU---UGUaCUAGUUUGGGUu -5'
16679 3' -51.3 NC_004156.1 + 156904 0.68 0.975878
Target:  5'- cUGCUGGCCAAC--GAUCAcguuACCUu- -3'
miRNA:   3'- cACGACCGGUUGuaCUAGUu---UGGGuu -5'
16679 3' -51.3 NC_004156.1 + 130767 0.69 0.967182
Target:  5'- cGUGCaaauUGGCCAACuUGGUgcCAAcGCCCAAa -3'
miRNA:   3'- -CACG----ACCGGUUGuACUA--GUU-UGGGUU- -5'
16679 3' -51.3 NC_004156.1 + 44609 0.7 0.933252
Target:  5'- -cGUUgaGGCCGGCGUGcaccuuuGUCAAACCCAc -3'
miRNA:   3'- caCGA--CCGGUUGUAC-------UAGUUUGGGUu -5'
16679 3' -51.3 NC_004156.1 + 112401 1.07 0.012463
Target:  5'- aGUGCUGGCCAACAUGAUCAAACCCAAa -3'
miRNA:   3'- -CACGACCGGUUGUACUAGUUUGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.