miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16679 5' -59.4 NC_004156.1 + 54845 0.66 0.855863
Target:  5'- aUGCCACuauacacaacucGGCauCGGCaUCgGUAUCGGCCu -3'
miRNA:   3'- -AUGGUG------------UCGc-GCCG-AGgUAUGGCCGG- -5'
16679 5' -59.4 NC_004156.1 + 92039 0.66 0.855863
Target:  5'- ---aACGGCuuauGCGGCUCgGUACCguagggguucucGGCCg -3'
miRNA:   3'- auggUGUCG----CGCCGAGgUAUGG------------CCGG- -5'
16679 5' -59.4 NC_004156.1 + 210245 0.66 0.848326
Target:  5'- aGCCGCAGCaGgGGCUCCAgga-GGg- -3'
miRNA:   3'- aUGGUGUCG-CgCCGAGGUauggCCgg -5'
16679 5' -59.4 NC_004156.1 + 210452 0.66 0.840607
Target:  5'- cUGCUGCGGCuGCGGCcucugCCAgAUCGGgCa -3'
miRNA:   3'- -AUGGUGUCG-CGCCGa----GGUaUGGCCgG- -5'
16679 5' -59.4 NC_004156.1 + 89380 0.66 0.832715
Target:  5'- aUACUGCAGUGCGaGCaccgaagCUAUAUUGGCUc -3'
miRNA:   3'- -AUGGUGUCGCGC-CGa------GGUAUGGCCGG- -5'
16679 5' -59.4 NC_004156.1 + 81206 0.66 0.832715
Target:  5'- uUGCCGUGG-GCagGGCUCUAacGCCGGCCa -3'
miRNA:   3'- -AUGGUGUCgCG--CCGAGGUa-UGGCCGG- -5'
16679 5' -59.4 NC_004156.1 + 183578 0.67 0.816435
Target:  5'- gGCCGCAcugggaccuuGUGUGGCUCCGcucuUGCgaucgaUGGCCu -3'
miRNA:   3'- aUGGUGU----------CGCGCCGAGGU----AUG------GCCGG- -5'
16679 5' -59.4 NC_004156.1 + 182014 0.67 0.782087
Target:  5'- aUACC-CAGUGCaaaaaCCGUACUGGCCa -3'
miRNA:   3'- -AUGGuGUCGCGccga-GGUAUGGCCGG- -5'
16679 5' -59.4 NC_004156.1 + 207201 0.68 0.755002
Target:  5'- gACCGCAGC-CGuaUCCucUACUGGCg -3'
miRNA:   3'- aUGGUGUCGcGCcgAGGu-AUGGCCGg -5'
16679 5' -59.4 NC_004156.1 + 110871 0.7 0.649679
Target:  5'- aGCgCAUAGCGUGGCUUguaaaacagauUGUGCCGGUa -3'
miRNA:   3'- aUG-GUGUCGCGCCGAG-----------GUAUGGCCGg -5'
16679 5' -59.4 NC_004156.1 + 40533 0.71 0.5618
Target:  5'- gGCUugGGCGCuGGCUCUGgcuCUGGCUc -3'
miRNA:   3'- aUGGugUCGCG-CCGAGGUau-GGCCGG- -5'
16679 5' -59.4 NC_004156.1 + 45604 0.71 0.552182
Target:  5'- gGCCACAGU--GGCUCCgAUGuuGGCUg -3'
miRNA:   3'- aUGGUGUCGcgCCGAGG-UAUggCCGG- -5'
16679 5' -59.4 NC_004156.1 + 106476 0.72 0.486528
Target:  5'- uUGCCgauGCAGC-CGGCUCCuUGCUgauGGCCg -3'
miRNA:   3'- -AUGG---UGUCGcGCCGAGGuAUGG---CCGG- -5'
16679 5' -59.4 NC_004156.1 + 1046 0.73 0.43334
Target:  5'- aUACCccUAGgGCGGCUCCAucUAUCGGCa -3'
miRNA:   3'- -AUGGu-GUCgCGCCGAGGU--AUGGCCGg -5'
16679 5' -59.4 NC_004156.1 + 112435 1.1 0.00165
Target:  5'- aUACCACAGCGCGGCUCCAUACCGGCCa -3'
miRNA:   3'- -AUGGUGUCGCGCCGAGGUAUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.