miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1668 3' -60.6 NC_001347.2 + 63065 0.66 0.828861
Target:  5'- gGUGGCGGag-GACUGCcGGCgggUGUg -3'
miRNA:   3'- gCACCGCCggaCUGACG-CCGacaGCG- -5'
1668 3' -60.6 NC_001347.2 + 7844 0.66 0.828861
Target:  5'- gGUGGCGGCg-GACUGUcaGGUaucCGCg -3'
miRNA:   3'- gCACCGCCGgaCUGACG--CCGacaGCG- -5'
1668 3' -60.6 NC_001347.2 + 229078 0.66 0.820055
Target:  5'- uGUGGCuGGCaUGAUugUGCGGCaugugugUGUUGUa -3'
miRNA:   3'- gCACCG-CCGgACUG--ACGCCG-------ACAGCG- -5'
1668 3' -60.6 NC_001347.2 + 156677 0.66 0.812713
Target:  5'- -aUGGCGGCggGuCgugGCGGCugUGUCGUu -3'
miRNA:   3'- gcACCGCCGgaCuGa--CGCCG--ACAGCG- -5'
1668 3' -60.6 NC_001347.2 + 155133 0.66 0.795984
Target:  5'- --aGGCGGCCgccGCgGCGGCcagCGCu -3'
miRNA:   3'- gcaCCGCCGGac-UGaCGCCGacaGCG- -5'
1668 3' -60.6 NC_001347.2 + 158006 0.66 0.795984
Target:  5'- --cGGCGGCa--GCUGCGGCgGUaggacaCGCg -3'
miRNA:   3'- gcaCCGCCGgacUGACGCCGaCA------GCG- -5'
1668 3' -60.6 NC_001347.2 + 107341 0.66 0.787418
Target:  5'- aGUGGCGuuUcGcCUGCGGCUGcgaCGCg -3'
miRNA:   3'- gCACCGCcgGaCuGACGCCGACa--GCG- -5'
1668 3' -60.6 NC_001347.2 + 21339 0.67 0.769923
Target:  5'- -cUGGCGGUaUGGCUGCGcGCcuccguccucGUCGCc -3'
miRNA:   3'- gcACCGCCGgACUGACGC-CGa---------CAGCG- -5'
1668 3' -60.6 NC_001347.2 + 63108 0.67 0.769923
Target:  5'- cCGUGGCcgccgcGGCCgccGCUGUGGCcggagugcccGUCGCc -3'
miRNA:   3'- -GCACCG------CCGGac-UGACGCCGa---------CAGCG- -5'
1668 3' -60.6 NC_001347.2 + 44049 0.67 0.761008
Target:  5'- gGUGGUGGCgCUGGgggugGCGGCaGUgGUa -3'
miRNA:   3'- gCACCGCCG-GACUga---CGCCGaCAgCG- -5'
1668 3' -60.6 NC_001347.2 + 173554 0.67 0.761008
Target:  5'- gGUGGCGGCagccucucuucgCUGGCcaaUGcCGGCgGUCuGCa -3'
miRNA:   3'- gCACCGCCG------------GACUG---AC-GCCGaCAG-CG- -5'
1668 3' -60.6 NC_001347.2 + 89177 0.67 0.751991
Target:  5'- gCGUGGUGaGCCgguGCUGCGGUccguagGUaCGCc -3'
miRNA:   3'- -GCACCGC-CGGac-UGACGCCGa-----CA-GCG- -5'
1668 3' -60.6 NC_001347.2 + 142459 0.67 0.733685
Target:  5'- gGUGGCGGUCUucuuCU-CGGCgaguccGUCGCg -3'
miRNA:   3'- gCACCGCCGGAcu--GAcGCCGa-----CAGCG- -5'
1668 3' -60.6 NC_001347.2 + 1873 0.67 0.730911
Target:  5'- cCGUGcGuCGGCaccugaaccagcguCUGuGCUGCGGCUGgcuggCGCu -3'
miRNA:   3'- -GCAC-C-GCCG--------------GAC-UGACGCCGACa----GCG- -5'
1668 3' -60.6 NC_001347.2 + 62766 0.68 0.724411
Target:  5'- --cGGCGGCC-GACcccgccguUGCGGCcGcCGCu -3'
miRNA:   3'- gcaCCGCCGGaCUG--------ACGCCGaCaGCG- -5'
1668 3' -60.6 NC_001347.2 + 143676 0.68 0.724411
Target:  5'- --aGGcCGGCCUGGagguCUGCGcGCaGUUGCu -3'
miRNA:   3'- gcaCC-GCCGGACU----GACGC-CGaCAGCG- -5'
1668 3' -60.6 NC_001347.2 + 77986 0.68 0.715066
Target:  5'- aCGUGGCGGCCgaACcGCuGGCUuaugagCGCg -3'
miRNA:   3'- -GCACCGCCGGacUGaCG-CCGAca----GCG- -5'
1668 3' -60.6 NC_001347.2 + 74890 0.68 0.705658
Target:  5'- gGUGGCGGUCacugggcaGACUGagcacGUUGUCGCu -3'
miRNA:   3'- gCACCGCCGGa-------CUGACgc---CGACAGCG- -5'
1668 3' -60.6 NC_001347.2 + 88617 0.68 0.696196
Target:  5'- --cGGCGGCCUG-C-GCGGcCUGcacCGCg -3'
miRNA:   3'- gcaCCGCCGGACuGaCGCC-GACa--GCG- -5'
1668 3' -60.6 NC_001347.2 + 126681 0.68 0.696196
Target:  5'- gCGUGGUGGCuuacgacgCUGAC-GCGGCgcccgaagCGCa -3'
miRNA:   3'- -GCACCGCCG--------GACUGaCGCCGaca-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.