miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1668 5' -52.3 NC_001347.2 + 150844 0.66 0.995477
Target:  5'- aCGGCGuGACccaCCGCUUUGug--CGUGCu -3'
miRNA:   3'- -GCCGC-CUGc--GGCGAAAUuauaGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 90228 0.66 0.995477
Target:  5'- uGGCGG-CGUCGUUUUucgga-GCGCg -3'
miRNA:   3'- gCCGCCuGCGGCGAAAuuauagCGUG- -5'
1668 5' -52.3 NC_001347.2 + 88649 0.66 0.995477
Target:  5'- gCGGCGGccuGCGCaGCU------UCGCGCa -3'
miRNA:   3'- -GCCGCC---UGCGgCGAaauuauAGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 31393 0.66 0.99534
Target:  5'- aGGCGGugGCUGCgccucc-UCGUcgGCc -3'
miRNA:   3'- gCCGCCugCGGCGaaauuauAGCG--UG- -5'
1668 5' -52.3 NC_001347.2 + 37168 0.66 0.994756
Target:  5'- gGGCGGugGCgGCcUUGGcgGUCGgGu -3'
miRNA:   3'- gCCGCCugCGgCGaAAUUa-UAGCgUg -5'
1668 5' -52.3 NC_001347.2 + 156680 0.66 0.994756
Target:  5'- gCGGCGGGuCGUgGCggcuGUGUCGUu- -3'
miRNA:   3'- -GCCGCCU-GCGgCGaaauUAUAGCGug -5'
1668 5' -52.3 NC_001347.2 + 125261 0.66 0.994756
Target:  5'- -cGCGGACGCCGCUUUcccccugaAcgAcCGC-Cg -3'
miRNA:   3'- gcCGCCUGCGGCGAAA--------UuaUaGCGuG- -5'
1668 5' -52.3 NC_001347.2 + 114476 0.66 0.993944
Target:  5'- gCGGCGGACuGCugacgCGCUUUGugca-GCGCc -3'
miRNA:   3'- -GCCGCCUG-CG-----GCGAAAUuauagCGUG- -5'
1668 5' -52.3 NC_001347.2 + 192394 0.66 0.993944
Target:  5'- uGGaGGACuuuGCCGcCUUU--UAUCGCACc -3'
miRNA:   3'- gCCgCCUG---CGGC-GAAAuuAUAGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 76079 0.66 0.993944
Target:  5'- aGGCGGAUcugcucgugcaGCCGCUUgaagUAAgccUGCACc -3'
miRNA:   3'- gCCGCCUG-----------CGGCGAA----AUUauaGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 110519 0.66 0.993682
Target:  5'- gCGGCGcGGCggcgaagaaaaucgGCCGCg--AAUGgaagCGCGCg -3'
miRNA:   3'- -GCCGC-CUG--------------CGGCGaaaUUAUa---GCGUG- -5'
1668 5' -52.3 NC_001347.2 + 173668 0.66 0.993592
Target:  5'- gCGGCGGugGCgGCaagaa----GCACg -3'
miRNA:   3'- -GCCGCCugCGgCGaaauuauagCGUG- -5'
1668 5' -52.3 NC_001347.2 + 63593 0.66 0.992438
Target:  5'- cCGGUGG-UGCCGCgcucuacuUCGUACc -3'
miRNA:   3'- -GCCGCCuGCGGCGaaauuau-AGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 85949 0.66 0.992018
Target:  5'- cCGGCGaGACGCCGg--------CGCGCg -3'
miRNA:   3'- -GCCGC-CUGCGGCgaaauuauaGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 38317 0.66 0.992018
Target:  5'- cCGGCGG-CGCCGUacggcUGcgGagGCACa -3'
miRNA:   3'- -GCCGCCuGCGGCGaa---AUuaUagCGUG- -5'
1668 5' -52.3 NC_001347.2 + 125778 0.67 0.991354
Target:  5'- uCGGCcacaGGCGCgGCUUUGcgAcggcacaucagcagcUCGCACa -3'
miRNA:   3'- -GCCGc---CUGCGgCGAAAUuaU---------------AGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 195635 0.67 0.990888
Target:  5'- aGGCuGugcGCGCCGgcCUguuGUGUCGCACg -3'
miRNA:   3'- gCCGcC---UGCGGC--GAaauUAUAGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 128462 0.67 0.989635
Target:  5'- gCGGCGcGACGgCGCg-------CGCACg -3'
miRNA:   3'- -GCCGC-CUGCgGCGaaauuauaGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 168534 0.67 0.989635
Target:  5'- uCGGCGG-CGUacaGCgg----GUCGCGCg -3'
miRNA:   3'- -GCCGCCuGCGg--CGaaauuaUAGCGUG- -5'
1668 5' -52.3 NC_001347.2 + 208114 0.67 0.989635
Target:  5'- aCGGCGGA-GCCGCgucgc--UCGCcgGCg -3'
miRNA:   3'- -GCCGCCUgCGGCGaaauuauAGCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.