Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 224104 | 0.66 | 0.963114 |
|
Target: 5'- -gGCuCGGUUUGCUgUG-GCUGUGGCu -3' miRNA: 3'- aaCGuGCCGAGUGGgACuUGAUACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 214149 | 0.67 | 0.959612 |
|
Target: 5'- gUGCACGGUacgCACCagu-ACUcUGGCg -3' miRNA: 3'- aACGUGCCGa--GUGGgacuUGAuACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 40539 | 0.67 | 0.955887 |
|
Target: 5'- -gGCGCuGGCUCugGCUCUG-GCUcUGGCc -3' miRNA: 3'- aaCGUG-CCGAG--UGGGACuUGAuACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 142439 | 0.67 | 0.938683 |
|
Target: 5'- -aGCuagacuCGGCUUggacuCCUUGggUUGUGGCu -3' miRNA: 3'- aaCGu-----GCCGAGu----GGGACuuGAUACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 115649 | 0.68 | 0.923291 |
|
Target: 5'- gUGCucucgACGGaaCACUCUGccGCUAUGGCa -3' miRNA: 3'- aACG-----UGCCgaGUGGGACu-UGAUACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 129385 | 0.69 | 0.905744 |
|
Target: 5'- -cGCGCaaCUCuGCCuCUGGACUGUGGUg -3' miRNA: 3'- aaCGUGccGAG-UGG-GACUUGAUACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 110580 | 0.69 | 0.899422 |
|
Target: 5'- aUGCGCaGCaUguCCUgGAACUAUGGCu -3' miRNA: 3'- aACGUGcCG-AguGGGaCUUGAUACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 10365 | 0.74 | 0.661114 |
|
Target: 5'- cUGCGCGGUUUAauaCUGGGCgGUGGCa -3' miRNA: 3'- aACGUGCCGAGUgg-GACUUGaUACCG- -5' |
|||||||
| 16681 | 5' | -54.3 | NC_004156.1 | + | 126087 | 1.1 | 0.004328 |
|
Target: 5'- gUUGCACGGCUCACCCUGAACUAUGGCa -3' miRNA: 3'- -AACGUGCCGAGUGGGACUUGAUACCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home