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miRNA: 3'- -CGGCCgACGucAACUCgACGugAUGU- -5'
miRNA: 3'- -CGg--CCGaCGUCAACuCGA-CGUGAUGu -5'
miRNA: 3'- -CGGCCGACGUCAACUCGACGUGAUGU- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio#
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P value |
| Predicted miRNA align pattern | |||||||
| 16683 | 5' | -55 | NC_004156.1 | + | 44697 | 0.67 | 0.936256 |
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Target: 5'- uGCCGG-UGC--UUGAGgUGCugUGCAc -3' miRNA: 3'- -CGGCCgACGucAACUCgACGugAUGU- -5' |
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| 16683 | 5' | -55 | NC_004156.1 | + | 1790 | 0.68 | 0.920613 |
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Target: 5'- aGCaguGGUaGCAGUUGcGCUaGCGCUACu -3' miRNA: 3'- -CGg--CCGaCGUCAACuCGA-CGUGAUGu -5' |
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| 16683 | 5' | -55 | NC_004156.1 | + | 132837 | 1.1 | 0.003877 |
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Target: 5'- gGCCGGCUGCAGUUGAGCUGCACUACAc -3' miRNA: 3'- -CGGCCGACGUCAACUCGACGUGAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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