miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16686 3' -46.3 NC_004156.1 + 101479 0.66 0.99999
Target:  5'- cUCUUGUACGACGcucguuccGGCUG-AGUUg -3'
miRNA:   3'- uAGAACAUGCUGUuua-----CCGACgUUAA- -5'
16686 3' -46.3 NC_004156.1 + 64476 0.66 0.999986
Target:  5'- cAUCUU-UACGAUccaccAUGGCUGCAAa- -3'
miRNA:   3'- -UAGAAcAUGCUGuu---UACCGACGUUaa -5'
16686 3' -46.3 NC_004156.1 + 120739 0.66 0.999981
Target:  5'- uGUCUgaUGUugGACAGAgGGaUGCAAg- -3'
miRNA:   3'- -UAGA--ACAugCUGUUUaCCgACGUUaa -5'
16686 3' -46.3 NC_004156.1 + 146149 0.67 0.999933
Target:  5'- --gUUGUGCGACGucuacaaaaaggcGGUGGCUGUg--- -3'
miRNA:   3'- uagAACAUGCUGU-------------UUACCGACGuuaa -5'
16686 3' -46.3 NC_004156.1 + 97505 0.68 0.99985
Target:  5'- cGUCUUG-GCGugAA--GGCUGCGAg- -3'
miRNA:   3'- -UAGAACaUGCugUUuaCCGACGUUaa -5'
16686 3' -46.3 NC_004156.1 + 202923 0.68 0.999681
Target:  5'- aGUCUUGUAUGACcAcgGGCguUGCGc-- -3'
miRNA:   3'- -UAGAACAUGCUGuUuaCCG--ACGUuaa -5'
16686 3' -46.3 NC_004156.1 + 154904 0.69 0.99921
Target:  5'- gGUCaUGUACGGCAAGUGaUUGCAc-- -3'
miRNA:   3'- -UAGaACAUGCUGUUUACcGACGUuaa -5'
16686 3' -46.3 NC_004156.1 + 149336 0.69 0.998803
Target:  5'- cGUCggUGUACGAgGAGgugguuguguUGGCUGUAGUg -3'
miRNA:   3'- -UAGa-ACAUGCUgUUU----------ACCGACGUUAa -5'
16686 3' -46.3 NC_004156.1 + 96520 0.69 0.998803
Target:  5'- aAUCUUGUagaauuucauACGAUGAAaGGUUGCAAUg -3'
miRNA:   3'- -UAGAACA----------UGCUGUUUaCCGACGUUAa -5'
16686 3' -46.3 NC_004156.1 + 2869 0.72 0.990887
Target:  5'- gGUCUUGUACGGCAAuggaacGGUUGguAUa -3'
miRNA:   3'- -UAGAACAUGCUGUUua----CCGACguUAa -5'
16686 3' -46.3 NC_004156.1 + 171246 0.74 0.972367
Target:  5'- ----aGUGCGACAAAUGGCUaCAGUg -3'
miRNA:   3'- uagaaCAUGCUGUUUACCGAcGUUAa -5'
16686 3' -46.3 NC_004156.1 + 144131 1.05 0.049919
Target:  5'- cAUCUUGUACGACAAAUGGCUGCAAUUa -3'
miRNA:   3'- -UAGAACAUGCUGUUUACCGACGUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.