miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16687 5' -53.2 NC_004156.1 + 218335 0.66 0.988383
Target:  5'- aCAUGCACucGCCGCUACggaucgaaGCCagGCCc- -3'
miRNA:   3'- aGUACGUG--UGGUGAUG--------UGGagUGGca -5'
16687 5' -53.2 NC_004156.1 + 215276 0.71 0.863444
Target:  5'- cUC-UGCACAaaaaCACUACAUC-CACCGUu -3'
miRNA:   3'- -AGuACGUGUg---GUGAUGUGGaGUGGCA- -5'
16687 5' -53.2 NC_004156.1 + 213872 0.66 0.985221
Target:  5'- -uGUGCACaAUgACUGCACCguauCCGUa -3'
miRNA:   3'- agUACGUG-UGgUGAUGUGGagu-GGCA- -5'
16687 5' -53.2 NC_004156.1 + 213399 0.67 0.97793
Target:  5'- -gAUGCACACUcugaacgacaccgguACUcGCACUUUACCGa -3'
miRNA:   3'- agUACGUGUGG---------------UGA-UGUGGAGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 208201 0.66 0.989753
Target:  5'- -aAUGCACACCGCUAgagGCCUacauuaUAUCGUc -3'
miRNA:   3'- agUACGUGUGGUGAUg--UGGA------GUGGCA- -5'
16687 5' -53.2 NC_004156.1 + 205353 0.68 0.962462
Target:  5'- uUCGUGCcucCAUCugUGCACCcgugUACCGa -3'
miRNA:   3'- -AGUACGu--GUGGugAUGUGGa---GUGGCa -5'
16687 5' -53.2 NC_004156.1 + 201963 0.68 0.951199
Target:  5'- gUCGUGCAagACCACcgACACCggagCGCUGc -3'
miRNA:   3'- -AGUACGUg-UGGUGa-UGUGGa---GUGGCa -5'
16687 5' -53.2 NC_004156.1 + 193608 0.72 0.823223
Target:  5'- aUCAUGCACAgUACUACGCugcgauCUUugCGUg -3'
miRNA:   3'- -AGUACGUGUgGUGAUGUG------GAGugGCA- -5'
16687 5' -53.2 NC_004156.1 + 183874 0.66 0.988383
Target:  5'- aCA-GCACACUACcgauCGCCaCACCGg -3'
miRNA:   3'- aGUaCGUGUGGUGau--GUGGaGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 165239 0.68 0.955178
Target:  5'- aCA-GCGCAUCgucgACUACGCCUCGCUu- -3'
miRNA:   3'- aGUaCGUGUGG----UGAUGUGGAGUGGca -5'
16687 5' -53.2 NC_004156.1 + 151295 0.72 0.839883
Target:  5'- aUCGuUGCGCACUcggacCACCUCACCGUu -3'
miRNA:   3'- -AGU-ACGUGUGGugau-GUGGAGUGGCA- -5'
16687 5' -53.2 NC_004156.1 + 144581 1.09 0.007889
Target:  5'- uUCAUGCACACCACUACACCUCACCGUa -3'
miRNA:   3'- -AGUACGUGUGGUGAUGUGGAGUGGCA- -5'
16687 5' -53.2 NC_004156.1 + 143314 0.66 0.985221
Target:  5'- -gGUGCACACCAguUUACACUUgaaGCCa- -3'
miRNA:   3'- agUACGUGUGGU--GAUGUGGAg--UGGca -5'
16687 5' -53.2 NC_004156.1 + 138124 0.67 0.981441
Target:  5'- -uGUGCACGCCGCguuugaUGCAaauCUUUACCGa -3'
miRNA:   3'- agUACGUGUGGUG------AUGU---GGAGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 137843 0.69 0.927808
Target:  5'- aCAUGCAUACaCAaacacauuggcUUACACCUCACUa- -3'
miRNA:   3'- aGUACGUGUG-GU-----------GAUGUGGAGUGGca -5'
16687 5' -53.2 NC_004156.1 + 134124 0.68 0.955178
Target:  5'- gCAUGCACGCaAgUGCACCgaCACCa- -3'
miRNA:   3'- aGUACGUGUGgUgAUGUGGa-GUGGca -5'
16687 5' -53.2 NC_004156.1 + 124607 0.68 0.951199
Target:  5'- -gGUGCAaauguCGCCGCUAC-CC-CACCGa -3'
miRNA:   3'- agUACGU-----GUGGUGAUGuGGaGUGGCa -5'
16687 5' -53.2 NC_004156.1 + 114320 0.67 0.981441
Target:  5'- ---cGCACACCACc-CACUUUgACCGUg -3'
miRNA:   3'- aguaCGUGUGGUGauGUGGAG-UGGCA- -5'
16687 5' -53.2 NC_004156.1 + 112903 0.69 0.942549
Target:  5'- ---aGCGgGCCACUACAUCU-GCCGa -3'
miRNA:   3'- aguaCGUgUGGUGAUGUGGAgUGGCa -5'
16687 5' -53.2 NC_004156.1 + 111838 0.68 0.965777
Target:  5'- -uGUGCACACUGCUACugCaagugguacugUCugCGg -3'
miRNA:   3'- agUACGUGUGGUGAUGugG-----------AGugGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.