miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16688 3' -46.1 NC_004156.1 + 42964 0.66 0.999999
Target:  5'- --cGUUGAUCA-AUUGCGAGACucugACCAa -3'
miRNA:   3'- cuuUAGCUAGUgUAGCGCUUUG----UGGU- -5'
16688 3' -46.1 NC_004156.1 + 106102 0.66 0.999999
Target:  5'- --uAUCGAUCGCAUCGaacugcuAGCACa- -3'
miRNA:   3'- cuuUAGCUAGUGUAGCgcu----UUGUGgu -5'
16688 3' -46.1 NC_004156.1 + 91783 0.66 0.999998
Target:  5'- cGGAGUCGGUgGCGUC-CaGGAUGCCAc -3'
miRNA:   3'- -CUUUAGCUAgUGUAGcGcUUUGUGGU- -5'
16688 3' -46.1 NC_004156.1 + 145364 0.67 0.99999
Target:  5'- cGAAUCGAUCcCAUCGCauuguccGAAGUGCCGa -3'
miRNA:   3'- cUUUAGCUAGuGUAGCG-------CUUUGUGGU- -5'
16688 3' -46.1 NC_004156.1 + 183309 0.67 0.99999
Target:  5'- --cAUCGAUCGCAagaGCGGAGcCACaCAa -3'
miRNA:   3'- cuuUAGCUAGUGUag-CGCUUU-GUG-GU- -5'
16688 3' -46.1 NC_004156.1 + 173272 0.68 0.999973
Target:  5'- aGAAagGAUCGCAcCGUGguGCACCu -3'
miRNA:   3'- cUUUagCUAGUGUaGCGCuuUGUGGu -5'
16688 3' -46.1 NC_004156.1 + 104594 0.68 0.999916
Target:  5'- cGGAUCGAUCuCAUUGUGuacaugcGCACCGa -3'
miRNA:   3'- cUUUAGCUAGuGUAGCGCuu-----UGUGGU- -5'
16688 3' -46.1 NC_004156.1 + 23384 0.7 0.999409
Target:  5'- ----aCGAUCGCAUCGC---ACGCCu -3'
miRNA:   3'- cuuuaGCUAGUGUAGCGcuuUGUGGu -5'
16688 3' -46.1 NC_004156.1 + 69481 0.71 0.998664
Target:  5'- ----cCGAUCGCAUCaGCGAcGACACUc -3'
miRNA:   3'- cuuuaGCUAGUGUAG-CGCU-UUGUGGu -5'
16688 3' -46.1 NC_004156.1 + 190323 0.72 0.997679
Target:  5'- uGGAGUCGAUCauuuuggauGCAUUgaGCGAuguACACCAu -3'
miRNA:   3'- -CUUUAGCUAG---------UGUAG--CGCUu--UGUGGU- -5'
16688 3' -46.1 NC_004156.1 + 105982 0.72 0.997239
Target:  5'- aGAGUUGAUCGCAUCG-GAAAacuuUACCAc -3'
miRNA:   3'- cUUUAGCUAGUGUAGCgCUUU----GUGGU- -5'
16688 3' -46.1 NC_004156.1 + 207332 0.72 0.996731
Target:  5'- -cGAUUGAUCGCAUCGaUGAuGGCAUCAg -3'
miRNA:   3'- cuUUAGCUAGUGUAGC-GCU-UUGUGGU- -5'
16688 3' -46.1 NC_004156.1 + 175025 0.73 0.995484
Target:  5'- -cGGUCuGGUCACggUGCGAGACugCAa -3'
miRNA:   3'- cuUUAG-CUAGUGuaGCGCUUUGugGU- -5'
16688 3' -46.1 NC_004156.1 + 145311 1.09 0.037877
Target:  5'- gGAAAUCGAUCACAUCGCGAAACACCAc -3'
miRNA:   3'- -CUUUAGCUAGUGUAGCGCUUUGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.