miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1669 3' -54.9 NC_001347.2 + 184100 0.66 0.97588
Target:  5'- cGGGGUUAUG--GGGGACGugACGGg -3'
miRNA:   3'- aCUCCGGUGCgaUCUCUGCugUGUCg -5'
1669 3' -54.9 NC_001347.2 + 197241 0.66 0.97588
Target:  5'- gGAGGUCACGCcacauGAagccgcGGCGGCGCguuauaAGCa -3'
miRNA:   3'- aCUCCGGUGCGau---CU------CUGCUGUG------UCG- -5'
1669 3' -54.9 NC_001347.2 + 173661 0.66 0.97588
Target:  5'- gGAGGUgGCGgcGGuGGCGGCAagaAGCa -3'
miRNA:   3'- aCUCCGgUGCgaUCuCUGCUGUg--UCG- -5'
1669 3' -54.9 NC_001347.2 + 143314 0.66 0.97588
Target:  5'- gGAGuCCACGCcguucaAGAGAa-ACGCGGCg -3'
miRNA:   3'- aCUCcGGUGCGa-----UCUCUgcUGUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 121059 0.66 0.97588
Target:  5'- -aAGcGCCcUGCUAGAauacGACGACAC-GCa -3'
miRNA:   3'- acUC-CGGuGCGAUCU----CUGCUGUGuCG- -5'
1669 3' -54.9 NC_001347.2 + 86905 0.66 0.97588
Target:  5'- cGGcGCCAUGCUcgcccaGGAGACaGGCGCcguAGCu -3'
miRNA:   3'- aCUcCGGUGCGA------UCUCUG-CUGUG---UCG- -5'
1669 3' -54.9 NC_001347.2 + 185369 0.66 0.97588
Target:  5'- gGGGGCCGCGgagGGAGGagaGGgACGGg -3'
miRNA:   3'- aCUCCGGUGCga-UCUCUg--CUgUGUCg -5'
1669 3' -54.9 NC_001347.2 + 180259 0.66 0.975634
Target:  5'- gGAGGagucugucgaCCGCagcggugGCUGGAGAa-GCGCAGCg -3'
miRNA:   3'- aCUCC----------GGUG-------CGAUCUCUgcUGUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 164598 0.66 0.975135
Target:  5'- aGGGGCgACGC-AGAcacgagcgcugauuGACGGCAUGGa -3'
miRNA:   3'- aCUCCGgUGCGaUCU--------------CUGCUGUGUCg -5'
1669 3' -54.9 NC_001347.2 + 137069 0.66 0.973331
Target:  5'- aGGGGUCACGUgAGAaGCGGC--GGCg -3'
miRNA:   3'- aCUCCGGUGCGaUCUcUGCUGugUCG- -5'
1669 3' -54.9 NC_001347.2 + 192045 0.66 0.973331
Target:  5'- aGcGGCgACGacggUGGcggcGACGACACGGCg -3'
miRNA:   3'- aCuCCGgUGCg---AUCu---CUGCUGUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 139423 0.66 0.973331
Target:  5'- cUGAuuCCAUGCguggaGGAGGCGAcCACGGUg -3'
miRNA:   3'- -ACUccGGUGCGa----UCUCUGCU-GUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 1290 0.66 0.973331
Target:  5'- gGAcGGCCguacggauucuACGCgcgGGuGACGccGCGCAGCc -3'
miRNA:   3'- aCU-CCGG-----------UGCGa--UCuCUGC--UGUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 15357 0.66 0.973331
Target:  5'- aGAcGCCGCGUUGcccgauGAG-CGACGCgAGCg -3'
miRNA:   3'- aCUcCGGUGCGAU------CUCuGCUGUG-UCG- -5'
1669 3' -54.9 NC_001347.2 + 1722 0.66 0.973331
Target:  5'- cGGGaGCUGCGCcGGcGGugGGC-CGGCa -3'
miRNA:   3'- aCUC-CGGUGCGaUC-UCugCUGuGUCG- -5'
1669 3' -54.9 NC_001347.2 + 99144 0.66 0.973331
Target:  5'- cGcGGCgCGCGUacgccGAGAccCGACGCGGCg -3'
miRNA:   3'- aCuCCG-GUGCGau---CUCU--GCUGUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 191592 0.66 0.973331
Target:  5'- cGAGGCCGuguuguacUGCUcGGuGugGACACcaAGUa -3'
miRNA:   3'- aCUCCGGU--------GCGA-UCuCugCUGUG--UCG- -5'
1669 3' -54.9 NC_001347.2 + 215842 0.66 0.970593
Target:  5'- cGGGuGCuCACGCUGGAGGUGaAUGCuGCu -3'
miRNA:   3'- aCUC-CG-GUGCGAUCUCUGC-UGUGuCG- -5'
1669 3' -54.9 NC_001347.2 + 136143 0.66 0.970593
Target:  5'- gGAGG-CAgGCgGGAG-CGgGCGCAGCg -3'
miRNA:   3'- aCUCCgGUgCGaUCUCuGC-UGUGUCG- -5'
1669 3' -54.9 NC_001347.2 + 2140 0.66 0.970593
Target:  5'- gGAcGCgCACGCgguggucGGGGCGgACGCGGCa -3'
miRNA:   3'- aCUcCG-GUGCGau-----CUCUGC-UGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.