miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1669 5' -58.7 NC_001347.2 + 47145 0.66 0.891088
Target:  5'- -gGCCGCGGcAGCGg--GGAGGAGa- -3'
miRNA:   3'- gaCGGUGCCaUCGUggaCCUCCUCgg -5'
1669 5' -58.7 NC_001347.2 + 54355 0.66 0.884544
Target:  5'- -gGCCugGaucAGUACCUGGAG-AGCg -3'
miRNA:   3'- gaCGGugCca-UCGUGGACCUCcUCGg -5'
1669 5' -58.7 NC_001347.2 + 143665 0.66 0.884544
Target:  5'- cCUGgCGcCGGaGGCcgGCCUGGAGGucuGCg -3'
miRNA:   3'- -GACgGU-GCCaUCG--UGGACCUCCu--CGg -5'
1669 5' -58.7 NC_001347.2 + 16585 0.66 0.877794
Target:  5'- uUGCCGC--UGGUACCUGcuGGGuGCCg -3'
miRNA:   3'- gACGGUGccAUCGUGGACc-UCCuCGG- -5'
1669 5' -58.7 NC_001347.2 + 16068 0.66 0.877794
Target:  5'- -gGCC-CGGcAGCACCaUGccGGAGCUa -3'
miRNA:   3'- gaCGGuGCCaUCGUGG-ACcuCCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 77861 0.66 0.856354
Target:  5'- gCUGCUGCaGGUggccgAGCGCCUGGGc--GCCg -3'
miRNA:   3'- -GACGGUG-CCA-----UCGUGGACCUccuCGG- -5'
1669 5' -58.7 NC_001347.2 + 190661 0.67 0.848828
Target:  5'- uCUGCCGCGGUuGCACCccgaagUGGAuaucguaaGGcGCg -3'
miRNA:   3'- -GACGGUGCCAuCGUGG------ACCU--------CCuCGg -5'
1669 5' -58.7 NC_001347.2 + 155278 0.67 0.846535
Target:  5'- aCUGCaCAaGGUAGCGgCggcgacggagcuggUGGAcGGGGCCg -3'
miRNA:   3'- -GACG-GUgCCAUCGUgG--------------ACCU-CCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 144583 0.67 0.833239
Target:  5'- -gGCgGCGGccgGGCuCgUGGAGGAGgCa -3'
miRNA:   3'- gaCGgUGCCa--UCGuGgACCUCCUCgG- -5'
1669 5' -58.7 NC_001347.2 + 62354 0.67 0.82519
Target:  5'- -cGCCgGCGGgacuGguCCuauaagagacUGGAGGAGCCc -3'
miRNA:   3'- gaCGG-UGCCau--CguGG----------ACCUCCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 2248 0.67 0.816978
Target:  5'- -cGCCAugcUGGUGguGCugCUGGAcGAGCUg -3'
miRNA:   3'- gaCGGU---GCCAU--CGugGACCUcCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 18742 0.67 0.816978
Target:  5'- -cGaCCGCGGauuGCGCggcgagugucggUUGGAGGAGCUg -3'
miRNA:   3'- gaC-GGUGCCau-CGUG------------GACCUCCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 84400 0.67 0.816978
Target:  5'- -gGCCGCGGcagucgcuUAGCcaccACCUGGAcgggGGGGaCCg -3'
miRNA:   3'- gaCGGUGCC--------AUCG----UGGACCU----CCUC-GG- -5'
1669 5' -58.7 NC_001347.2 + 195463 0.67 0.808613
Target:  5'- aCUGCCAacccAGCAgCcGGAGGAGCa -3'
miRNA:   3'- -GACGGUgccaUCGUgGaCCUCCUCGg -5'
1669 5' -58.7 NC_001347.2 + 41371 0.67 0.807768
Target:  5'- uCUGUCugGcGUcAGCACCUgguuuuuuuacucGGAGGccacGGCCg -3'
miRNA:   3'- -GACGGugC-CA-UCGUGGA-------------CCUCC----UCGG- -5'
1669 5' -58.7 NC_001347.2 + 77123 0.68 0.800101
Target:  5'- uUGCCgcgGCGGUAGUugCggcaGAGGGGUUg -3'
miRNA:   3'- gACGG---UGCCAUCGugGac--CUCCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 156833 0.69 0.746366
Target:  5'- -gGuCCGCGcGUcGGCcUCUGGAGGAGCa -3'
miRNA:   3'- gaC-GGUGC-CA-UCGuGGACCUCCUCGg -5'
1669 5' -58.7 NC_001347.2 + 66989 0.69 0.746366
Target:  5'- -aGUgGCGGacaugcGGCugCUGG-GGGGCCa -3'
miRNA:   3'- gaCGgUGCCa-----UCGugGACCuCCUCGG- -5'
1669 5' -58.7 NC_001347.2 + 65710 0.69 0.746366
Target:  5'- gCUGCgcgaCACGGUGGCGgCggUGGAGGGcGCg -3'
miRNA:   3'- -GACG----GUGCCAUCGUgG--ACCUCCU-CGg -5'
1669 5' -58.7 NC_001347.2 + 138940 0.69 0.745438
Target:  5'- -aGCCACGaGgaacuaaccgcgcUAGCGCC-GGuGGGGCCc -3'
miRNA:   3'- gaCGGUGC-C-------------AUCGUGGaCCuCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.