Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16690 | 5' | -54.3 | NC_004156.1 | + | 164021 | 0.66 | 0.981396 |
Target: 5'- uCUCACUUUGGaGUGAUgCAU-CGGUa -3' miRNA: 3'- cGGGUGAAACCaCGCUAgGUAcGCCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 111583 | 0.66 | 0.981192 |
Target: 5'- uGCCCaugcuauugaugcACUUgagGGUGCG-UCUAaagGUGGCc -3' miRNA: 3'- -CGGG-------------UGAAa--CCACGCuAGGUa--CGCCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 84297 | 0.66 | 0.979281 |
Target: 5'- aGCCUc---UGGgacucgucaaaUGCGGUCCcUGCGGCc -3' miRNA: 3'- -CGGGugaaACC-----------ACGCUAGGuACGCCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 140371 | 0.67 | 0.959246 |
Target: 5'- gGCCgGC-UUGGUGUGGguacUCAUuGCGGUa -3' miRNA: 3'- -CGGgUGaAACCACGCUa---GGUA-CGCCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 218713 | 0.68 | 0.933804 |
Target: 5'- uGCCCuC-UUGGUGCuccUUUAUGUGGCg -3' miRNA: 3'- -CGGGuGaAACCACGcu-AGGUACGCCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 115926 | 0.7 | 0.887046 |
Target: 5'- cGUgUACgaUGuGUGCGAUgCCAUaGCGGCa -3' miRNA: 3'- -CGgGUGaaAC-CACGCUA-GGUA-CGCCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 137 | 0.74 | 0.696872 |
Target: 5'- uGCCUGCUgugUUGGUGUGGUgUAUGCuGGUg -3' miRNA: 3'- -CGGGUGA---AACCACGCUAgGUACG-CCG- -5' |
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16690 | 5' | -54.3 | NC_004156.1 | + | 163799 | 1.14 | 0.002876 |
Target: 5'- uGCCCACUUUGGUGCGAUCCAUGCGGCg -3' miRNA: 3'- -CGGGUGAAACCACGCUAGGUACGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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