miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16690 5' -54.3 NC_004156.1 + 164021 0.66 0.981396
Target:  5'- uCUCACUUUGGaGUGAUgCAU-CGGUa -3'
miRNA:   3'- cGGGUGAAACCaCGCUAgGUAcGCCG- -5'
16690 5' -54.3 NC_004156.1 + 111583 0.66 0.981192
Target:  5'- uGCCCaugcuauugaugcACUUgagGGUGCG-UCUAaagGUGGCc -3'
miRNA:   3'- -CGGG-------------UGAAa--CCACGCuAGGUa--CGCCG- -5'
16690 5' -54.3 NC_004156.1 + 84297 0.66 0.979281
Target:  5'- aGCCUc---UGGgacucgucaaaUGCGGUCCcUGCGGCc -3'
miRNA:   3'- -CGGGugaaACC-----------ACGCUAGGuACGCCG- -5'
16690 5' -54.3 NC_004156.1 + 140371 0.67 0.959246
Target:  5'- gGCCgGC-UUGGUGUGGguacUCAUuGCGGUa -3'
miRNA:   3'- -CGGgUGaAACCACGCUa---GGUA-CGCCG- -5'
16690 5' -54.3 NC_004156.1 + 218713 0.68 0.933804
Target:  5'- uGCCCuC-UUGGUGCuccUUUAUGUGGCg -3'
miRNA:   3'- -CGGGuGaAACCACGcu-AGGUACGCCG- -5'
16690 5' -54.3 NC_004156.1 + 115926 0.7 0.887046
Target:  5'- cGUgUACgaUGuGUGCGAUgCCAUaGCGGCa -3'
miRNA:   3'- -CGgGUGaaAC-CACGCUA-GGUA-CGCCG- -5'
16690 5' -54.3 NC_004156.1 + 137 0.74 0.696872
Target:  5'- uGCCUGCUgugUUGGUGUGGUgUAUGCuGGUg -3'
miRNA:   3'- -CGGGUGA---AACCACGCUAgGUACG-CCG- -5'
16690 5' -54.3 NC_004156.1 + 163799 1.14 0.002876
Target:  5'- uGCCCACUUUGGUGCGAUCCAUGCGGCg -3'
miRNA:   3'- -CGGGUGAAACCACGCUAGGUACGCCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.