miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16691 3' -55 NC_004156.1 + 58597 0.66 0.97108
Target:  5'- ----aGCGCAAggCAGAUgaGGACGCCGc -3'
miRNA:   3'- gcucaCGUGUUgaGUCUG--CCUGCGGC- -5'
16691 3' -55 NC_004156.1 + 66409 0.66 0.97108
Target:  5'- aGAGgGCACAAUUCAGAU-GACGaugaCGa -3'
miRNA:   3'- gCUCaCGUGUUGAGUCUGcCUGCg---GC- -5'
16691 3' -55 NC_004156.1 + 109876 0.66 0.97108
Target:  5'- aCGAGgaucCAGacaAGGCGGACGCCGa -3'
miRNA:   3'- -GCUCacguGUUgagUCUGCCUGCGGC- -5'
16691 3' -55 NC_004156.1 + 81073 0.67 0.965144
Target:  5'- uGAGUGCAU--CUUGGACG-AUGCCa -3'
miRNA:   3'- gCUCACGUGuuGAGUCUGCcUGCGGc -5'
16691 3' -55 NC_004156.1 + 179551 0.67 0.961875
Target:  5'- aCGAGUGgACAACUUuucGAUGcGAUGCUc -3'
miRNA:   3'- -GCUCACgUGUUGAGu--CUGC-CUGCGGc -5'
16691 3' -55 NC_004156.1 + 81096 0.68 0.937788
Target:  5'- cCGAGaGCuACGAUUCAGACuacguGGACGCg- -3'
miRNA:   3'- -GCUCaCG-UGUUGAGUCUG-----CCUGCGgc -5'
16691 3' -55 NC_004156.1 + 196393 0.69 0.905666
Target:  5'- ----aGCACAGCUUccaagaAGGCGGACGuuGa -3'
miRNA:   3'- gcucaCGUGUUGAG------UCUGCCUGCggC- -5'
16691 3' -55 NC_004156.1 + 184021 0.7 0.850622
Target:  5'- uGAGUGC---ACUCGGAaaGGAUGCCGu -3'
miRNA:   3'- gCUCACGuguUGAGUCUg-CCUGCGGC- -5'
16691 3' -55 NC_004156.1 + 106987 0.71 0.842842
Target:  5'- aGAGUGCA-AACUCuAGAgUGGugGCCu -3'
miRNA:   3'- gCUCACGUgUUGAG-UCU-GCCugCGGc -5'
16691 3' -55 NC_004156.1 + 203376 0.71 0.826746
Target:  5'- aCGAcGUGgACAAUcuugCAGcACGGAUGCCGa -3'
miRNA:   3'- -GCU-CACgUGUUGa---GUC-UGCCUGCGGC- -5'
16691 3' -55 NC_004156.1 + 9142 0.77 0.502639
Target:  5'- aGAGUGUACAGC-CAGAggaGGugGCCa -3'
miRNA:   3'- gCUCACGUGUUGaGUCUg--CCugCGGc -5'
16691 3' -55 NC_004156.1 + 165817 1.09 0.006273
Target:  5'- cCGAGUGCACAACUCAGACGGACGCCGu -3'
miRNA:   3'- -GCUCACGUGUUGAGUCUGCCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.