miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16695 3' -51 NC_004156.1 + 62806 0.66 0.997824
Target:  5'- --aGGGAccCACCacggaaccggugGUggUCGaCGAUGCCg -3'
miRNA:   3'- aaaCCCUa-GUGG------------CGuuAGC-GUUACGG- -5'
16695 3' -51 NC_004156.1 + 140197 0.66 0.997824
Target:  5'- aUUGGGG-CAUCGuCGGUCGCcugGUCu -3'
miRNA:   3'- aAACCCUaGUGGC-GUUAGCGuuaCGG- -5'
16695 3' -51 NC_004156.1 + 41802 0.66 0.997416
Target:  5'- gUUUGGGAUCcaACUGCGuuacCGCAuUGUa -3'
miRNA:   3'- -AAACCCUAG--UGGCGUua--GCGUuACGg -5'
16695 3' -51 NC_004156.1 + 88839 0.66 0.996409
Target:  5'- --cGuuGUCGCUGCuAUCGCAAcguUGCCu -3'
miRNA:   3'- aaaCccUAGUGGCGuUAGCGUU---ACGG- -5'
16695 3' -51 NC_004156.1 + 50829 0.66 0.995796
Target:  5'- -aUGGGAUCugUaCuaggUGUAGUGCCa -3'
miRNA:   3'- aaACCCUAGugGcGuua-GCGUUACGG- -5'
16695 3' -51 NC_004156.1 + 178617 0.66 0.995796
Target:  5'- -aUGGGcUCgacaaaggccACCGCAAUCaugGAUGCCg -3'
miRNA:   3'- aaACCCuAG----------UGGCGUUAGcg-UUACGG- -5'
16695 3' -51 NC_004156.1 + 114776 0.67 0.995099
Target:  5'- aUUGGGAUCGaaGCcggUGCAcgGCa -3'
miRNA:   3'- aAACCCUAGUggCGuuaGCGUuaCGg -5'
16695 3' -51 NC_004156.1 + 143357 0.67 0.992432
Target:  5'- cUUUGGcGAUgGCUGCAAaCGCAuccugGUGCa -3'
miRNA:   3'- -AAACC-CUAgUGGCGUUaGCGU-----UACGg -5'
16695 3' -51 NC_004156.1 + 128709 0.67 0.991322
Target:  5'- -gUGuuGAcCGCCGCAAUCGUAGaguUGCCc -3'
miRNA:   3'- aaACc-CUaGUGGCGUUAGCGUU---ACGG- -5'
16695 3' -51 NC_004156.1 + 64009 0.68 0.990088
Target:  5'- --aGGGAUguUgGCAAUCuacCGAUGCCu -3'
miRNA:   3'- aaaCCCUAguGgCGUUAGc--GUUACGG- -5'
16695 3' -51 NC_004156.1 + 107240 0.68 0.983728
Target:  5'- --cGGGucGUCACCGCAGgaguaccgaGUcuGAUGCCg -3'
miRNA:   3'- aaaCCC--UAGUGGCGUUag-------CG--UUACGG- -5'
16695 3' -51 NC_004156.1 + 80889 0.69 0.977218
Target:  5'- ---uGGAUCACgGCAcUCGUAuacuuUGCCa -3'
miRNA:   3'- aaacCCUAGUGgCGUuAGCGUu----ACGG- -5'
16695 3' -51 NC_004156.1 + 139265 0.7 0.968969
Target:  5'- --aGGuGGUaaucgacaaugCACCG-AAUCGCGAUGCCa -3'
miRNA:   3'- aaaCC-CUA-----------GUGGCgUUAGCGUUACGG- -5'
16695 3' -51 NC_004156.1 + 226812 0.7 0.968969
Target:  5'- --cGGaGUCACgGCAAUgGCAGUGUa -3'
miRNA:   3'- aaaCCcUAGUGgCGUUAgCGUUACGg -5'
16695 3' -51 NC_004156.1 + 203817 0.7 0.968969
Target:  5'- --aGGGAUCAUCGCAcggguuccaAUCGUuuAGUccGCCg -3'
miRNA:   3'- aaaCCCUAGUGGCGU---------UAGCG--UUA--CGG- -5'
16695 3' -51 NC_004156.1 + 140698 0.72 0.923437
Target:  5'- gUUGGGGUUuCCGCGAUCGaUuccaccaaagucaccGAUGCCc -3'
miRNA:   3'- aAACCCUAGuGGCGUUAGC-G---------------UUACGG- -5'
16695 3' -51 NC_004156.1 + 106949 0.75 0.809663
Target:  5'- -gUGGcGAUCGCUGCAAUCGUGugauuGUGCg -3'
miRNA:   3'- aaACC-CUAGUGGCGUUAGCGU-----UACGg -5'
16695 3' -51 NC_004156.1 + 180274 1.11 0.008611
Target:  5'- cUUUGGGAUCACCGCAAUCGCAAUGCCa -3'
miRNA:   3'- -AAACCCUAGUGGCGUUAGCGUUACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.