miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16696 5' -56.5 NC_004156.1 + 42125 0.66 0.944611
Target:  5'- -cGCGGCGa--UGaCGACGguaCUUGGACg -3'
miRNA:   3'- gaCGCCGUgugAC-GCUGUg--GAACCUG- -5'
16696 5' -56.5 NC_004156.1 + 81185 0.66 0.940133
Target:  5'- -cGcCGGC-CACUGCaGugACUagGGACa -3'
miRNA:   3'- gaC-GCCGuGUGACG-CugUGGaaCCUG- -5'
16696 5' -56.5 NC_004156.1 + 112241 0.66 0.930494
Target:  5'- aCUGCGGCcaACACUGCaucCACaUUGGcCa -3'
miRNA:   3'- -GACGCCG--UGUGACGcu-GUGgAACCuG- -5'
16696 5' -56.5 NC_004156.1 + 128638 0.67 0.914318
Target:  5'- aUGC-GCACACUGUGACuCCagaGGAUu -3'
miRNA:   3'- gACGcCGUGUGACGCUGuGGaa-CCUG- -5'
16696 5' -56.5 NC_004156.1 + 226199 0.67 0.88958
Target:  5'- -gGCGGCG-GCUGCuGCAUCUgGGGCu -3'
miRNA:   3'- gaCGCCGUgUGACGcUGUGGAaCCUG- -5'
16696 5' -56.5 NC_004156.1 + 35447 0.67 0.88958
Target:  5'- uUGCaGCACAaaugGUGgagcaucaggauACACCUUGGGCg -3'
miRNA:   3'- gACGcCGUGUga--CGC------------UGUGGAACCUG- -5'
16696 5' -56.5 NC_004156.1 + 62578 0.69 0.838127
Target:  5'- --cUGGCACACUGCGuACACgCgcGGAUg -3'
miRNA:   3'- gacGCCGUGUGACGC-UGUG-GaaCCUG- -5'
16696 5' -56.5 NC_004156.1 + 97526 0.69 0.830009
Target:  5'- -gGCGGUGCGCuUGUccauCACCUUGGAg -3'
miRNA:   3'- gaCGCCGUGUG-ACGcu--GUGGAACCUg -5'
16696 5' -56.5 NC_004156.1 + 96021 0.7 0.777944
Target:  5'- ----uGCugAUUGcCGGCACCUUGGACa -3'
miRNA:   3'- gacgcCGugUGAC-GCUGUGGAACCUG- -5'
16696 5' -56.5 NC_004156.1 + 30816 0.71 0.717502
Target:  5'- gUGCGGUGaaggauguuuugaGCUGagGACACCUUGGAUg -3'
miRNA:   3'- gACGCCGUg------------UGACg-CUGUGGAACCUG- -5'
16696 5' -56.5 NC_004156.1 + 137493 0.72 0.672155
Target:  5'- --uUGGUACAagagcaUGCaGACACCUUGGACu -3'
miRNA:   3'- gacGCCGUGUg-----ACG-CUGUGGAACCUG- -5'
16696 5' -56.5 NC_004156.1 + 180749 0.72 0.662181
Target:  5'- aUGCGGC-CACcGUGACAC--UGGACg -3'
miRNA:   3'- gACGCCGuGUGaCGCUGUGgaACCUG- -5'
16696 5' -56.5 NC_004156.1 + 197869 0.73 0.612121
Target:  5'- gUGCGGCugG-UGCGugACCaaacagUUGGACa -3'
miRNA:   3'- gACGCCGugUgACGCugUGG------AACCUG- -5'
16696 5' -56.5 NC_004156.1 + 180881 1.1 0.003186
Target:  5'- uCUGCGGCACACUGCGACACCUUGGACa -3'
miRNA:   3'- -GACGCCGUGUGACGCUGUGGAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.