miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16697 5' -49.7 NC_004156.1 + 174022 0.66 0.999545
Target:  5'- cGUUGUCAUCGUugguGGUCGACUcucuGUGUu -3'
miRNA:   3'- -CGACAGUAGCGu---UUAGUUGGc---CACGu -5'
16697 5' -49.7 NC_004156.1 + 188298 0.66 0.999304
Target:  5'- --cGUCGUUGCGGAUCccAACaguGGUGCc -3'
miRNA:   3'- cgaCAGUAGCGUUUAG--UUGg--CCACGu -5'
16697 5' -49.7 NC_004156.1 + 145322 0.67 0.99896
Target:  5'- ----aCAUCGCGAAaCAccaccACCGGUGCc -3'
miRNA:   3'- cgacaGUAGCGUUUaGU-----UGGCCACGu -5'
16697 5' -49.7 NC_004156.1 + 164543 0.67 0.99896
Target:  5'- -gUGUCGUUGCAGAUgAAUaagcgguaGGUGUAg -3'
miRNA:   3'- cgACAGUAGCGUUUAgUUGg-------CCACGU- -5'
16697 5' -49.7 NC_004156.1 + 105087 0.67 0.998739
Target:  5'- aGCaGUC-UUGCAauaAAUCAugGCCGGUGUu -3'
miRNA:   3'- -CGaCAGuAGCGU---UUAGU--UGGCCACGu -5'
16697 5' -49.7 NC_004156.1 + 172596 0.67 0.998739
Target:  5'- uGCcagUGUUGCAGuuuaCGACCGGUGCAu -3'
miRNA:   3'- -CGacaGUAGCGUUua--GUUGGCCACGU- -5'
16697 5' -49.7 NC_004156.1 + 165620 0.67 0.998479
Target:  5'- ---aUCAUCGCAuGUCGAUCGGU-CAc -3'
miRNA:   3'- cgacAGUAGCGUuUAGUUGGCCAcGU- -5'
16697 5' -49.7 NC_004156.1 + 164592 0.68 0.997416
Target:  5'- cGCUGUCGacucUUGCAuGAUCAAacaCGG-GCAa -3'
miRNA:   3'- -CGACAGU----AGCGU-UUAGUUg--GCCaCGU- -5'
16697 5' -49.7 NC_004156.1 + 130773 0.68 0.997416
Target:  5'- uUUGUCcgUGCAAAUUGGCCaacuuGGUGCc -3'
miRNA:   3'- cGACAGuaGCGUUUAGUUGG-----CCACGu -5'
16697 5' -49.7 NC_004156.1 + 101794 0.68 0.996947
Target:  5'- aGCagGaCAUgGCGGcAUCGACCGGUGUc -3'
miRNA:   3'- -CGa-CaGUAgCGUU-UAGUUGGCCACGu -5'
16697 5' -49.7 NC_004156.1 + 114785 0.69 0.994312
Target:  5'- ---cUCAUCgGCAuuggGAUCGaaGCCGGUGCAc -3'
miRNA:   3'- cgacAGUAG-CGU----UUAGU--UGGCCACGU- -5'
16697 5' -49.7 NC_004156.1 + 140187 0.69 0.994057
Target:  5'- gGCUGUCGUCGCGaucucuccaccuuuGAUCGuaACCuGUGgAa -3'
miRNA:   3'- -CGACAGUAGCGU--------------UUAGU--UGGcCACgU- -5'
16697 5' -49.7 NC_004156.1 + 146181 0.71 0.977218
Target:  5'- gGCaGUCgaGUCGCAGugugC-ACCGGUGCAc -3'
miRNA:   3'- -CGaCAG--UAGCGUUua--GuUGGCCACGU- -5'
16697 5' -49.7 NC_004156.1 + 69233 0.77 0.800608
Target:  5'- -gUGUCGUCGCuGAUgCGAUCGGUGCc -3'
miRNA:   3'- cgACAGUAGCGuUUA-GUUGGCCACGu -5'
16697 5' -49.7 NC_004156.1 + 146815 0.78 0.762894
Target:  5'- aGUUGccUCAUCGCAAAUaCAACCaGUGCGa -3'
miRNA:   3'- -CGAC--AGUAGCGUUUA-GUUGGcCACGU- -5'
16697 5' -49.7 NC_004156.1 + 196433 1.12 0.011106
Target:  5'- cGCUGUCAUCGCAAAUCAACCGGUGCAu -3'
miRNA:   3'- -CGACAGUAGCGUUUAGUUGGCCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.