miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16698 3' -50.1 NC_004156.1 + 68525 0.66 0.999169
Target:  5'- gCAAUC-CCGGCAAcg-GUGCaucaaagagcacUCAGAc -3'
miRNA:   3'- gGUUAGcGGCCGUUauaCACG------------AGUCU- -5'
16698 3' -50.1 NC_004156.1 + 77001 0.66 0.998987
Target:  5'- gCCAucAUUGCCGGCAAggacgGUagcGUUCAGu -3'
miRNA:   3'- -GGU--UAGCGGCCGUUaua--CA---CGAGUCu -5'
16698 3' -50.1 NC_004156.1 + 76751 0.67 0.998227
Target:  5'- aCCGuccUUGCCGGCAAUgAUG-GCUCc-- -3'
miRNA:   3'- -GGUu--AGCGGCCGUUA-UACaCGAGucu -5'
16698 3' -50.1 NC_004156.1 + 227615 0.67 0.997885
Target:  5'- uCCGGUUGCUGGauuuGUAauUGUUCAGAa -3'
miRNA:   3'- -GGUUAGCGGCCgu--UAUacACGAGUCU- -5'
16698 3' -50.1 NC_004156.1 + 106763 0.67 0.997489
Target:  5'- gCAAUCaaGCCcGCAAUGUGUGCaauaUCGGc -3'
miRNA:   3'- gGUUAG--CGGcCGUUAUACACG----AGUCu -5'
16698 3' -50.1 NC_004156.1 + 19457 0.68 0.994394
Target:  5'- aCCAAUCGaCCGGUGcUgacguucgacuacGUGUGCUCGu- -3'
miRNA:   3'- -GGUUAGC-GGCCGUuA-------------UACACGAGUcu -5'
16698 3' -50.1 NC_004156.1 + 175089 0.69 0.990373
Target:  5'- aCCAGUCuaCGGUAAUGU-UGUUCAGc -3'
miRNA:   3'- -GGUUAGcgGCCGUUAUAcACGAGUCu -5'
16698 3' -50.1 NC_004156.1 + 140246 0.71 0.966731
Target:  5'- aCCAAacUCGCCGGCAuUGUGaguguccaaUGCgaaCGGAg -3'
miRNA:   3'- -GGUU--AGCGGCCGUuAUAC---------ACGa--GUCU- -5'
16698 3' -50.1 NC_004156.1 + 183884 0.77 0.757739
Target:  5'- aCCGAUCGCCacaccgguuGGCAuc--GUGCUCAGGu -3'
miRNA:   3'- -GGUUAGCGG---------CCGUuauaCACGAGUCU- -5'
16698 3' -50.1 NC_004156.1 + 205441 1.11 0.011258
Target:  5'- gCCAAUCGCCGGCAAUAUGUGCUCAGAc -3'
miRNA:   3'- -GGUUAGCGGCCGUUAUACACGAGUCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.