Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16698 | 3' | -50.1 | NC_004156.1 | + | 205441 | 1.11 | 0.011258 |
Target: 5'- gCCAAUCGCCGGCAAUAUGUGCUCAGAc -3' miRNA: 3'- -GGUUAGCGGCCGUUAUACACGAGUCU- -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 183884 | 0.77 | 0.757739 |
Target: 5'- aCCGAUCGCCacaccgguuGGCAuc--GUGCUCAGGu -3' miRNA: 3'- -GGUUAGCGG---------CCGUuauaCACGAGUCU- -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 140246 | 0.71 | 0.966731 |
Target: 5'- aCCAAacUCGCCGGCAuUGUGaguguccaaUGCgaaCGGAg -3' miRNA: 3'- -GGUU--AGCGGCCGUuAUAC---------ACGa--GUCU- -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 175089 | 0.69 | 0.990373 |
Target: 5'- aCCAGUCuaCGGUAAUGU-UGUUCAGc -3' miRNA: 3'- -GGUUAGcgGCCGUUAUAcACGAGUCu -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 19457 | 0.68 | 0.994394 |
Target: 5'- aCCAAUCGaCCGGUGcUgacguucgacuacGUGUGCUCGu- -3' miRNA: 3'- -GGUUAGC-GGCCGUuA-------------UACACGAGUcu -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 227615 | 0.67 | 0.997885 |
Target: 5'- uCCGGUUGCUGGauuuGUAauUGUUCAGAa -3' miRNA: 3'- -GGUUAGCGGCCgu--UAUacACGAGUCU- -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 76751 | 0.67 | 0.998227 |
Target: 5'- aCCGuccUUGCCGGCAAUgAUG-GCUCc-- -3' miRNA: 3'- -GGUu--AGCGGCCGUUA-UACaCGAGucu -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 106763 | 0.67 | 0.997489 |
Target: 5'- gCAAUCaaGCCcGCAAUGUGUGCaauaUCGGc -3' miRNA: 3'- gGUUAG--CGGcCGUUAUACACG----AGUCu -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 77001 | 0.66 | 0.998987 |
Target: 5'- gCCAucAUUGCCGGCAAggacgGUagcGUUCAGu -3' miRNA: 3'- -GGU--UAGCGGCCGUUaua--CA---CGAGUCu -5' |
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16698 | 3' | -50.1 | NC_004156.1 | + | 68525 | 0.66 | 0.999169 |
Target: 5'- gCAAUC-CCGGCAAcg-GUGCaucaaagagcacUCAGAc -3' miRNA: 3'- gGUUAGcGGCCGUUauaCACG------------AGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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