miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16699 3' -51 NC_004156.1 + 220509 0.66 0.998181
Target:  5'- cGUGCacaaGAUUAauuAUCGCAGCCGAcuaacGUUCGg -3'
miRNA:   3'- cUACG----CUAGU---UAGCGUCGGCU-----UAGGU- -5'
16699 3' -51 NC_004156.1 + 54293 0.66 0.997831
Target:  5'- cGAUG-GAUCGAUCGauuGCCGuggCCGu -3'
miRNA:   3'- -CUACgCUAGUUAGCgu-CGGCuuaGGU- -5'
16699 3' -51 NC_004156.1 + 208576 0.66 0.996428
Target:  5'- gGGUGCGAUCAacaAUCG-AGCC--AUCCu -3'
miRNA:   3'- -CUACGCUAGU---UAGCgUCGGcuUAGGu -5'
16699 3' -51 NC_004156.1 + 79167 0.67 0.993476
Target:  5'- aGGUGCGAUCcaucauccgAAUCGguGCgUGAuucauGUCCAa -3'
miRNA:   3'- -CUACGCUAG---------UUAGCguCG-GCU-----UAGGU- -5'
16699 3' -51 NC_004156.1 + 68614 0.67 0.993383
Target:  5'- -cUGCGGUCAAuggaaacUUGUAGCCGAcaUCAa -3'
miRNA:   3'- cuACGCUAGUU-------AGCGUCGGCUuaGGU- -5'
16699 3' -51 NC_004156.1 + 114090 0.67 0.992494
Target:  5'- --gGCGGUCGGUauauuUGCGGCCauAUCCAu -3'
miRNA:   3'- cuaCGCUAGUUA-----GCGUCGGcuUAGGU- -5'
16699 3' -51 NC_004156.1 + 220378 0.68 0.991398
Target:  5'- aGUGUGGUgcAUUGCAGCCaGGAUCUg -3'
miRNA:   3'- cUACGCUAguUAGCGUCGG-CUUAGGu -5'
16699 3' -51 NC_004156.1 + 42056 0.68 0.987337
Target:  5'- aAUGCGGUaa--CGCAGuuGGAUCCc -3'
miRNA:   3'- cUACGCUAguuaGCGUCggCUUAGGu -5'
16699 3' -51 NC_004156.1 + 137215 0.68 0.985697
Target:  5'- --cGCGAUC-GUCuacaaUGGCCGAGUCCAa -3'
miRNA:   3'- cuaCGCUAGuUAGc----GUCGGCUUAGGU- -5'
16699 3' -51 NC_004156.1 + 75672 0.69 0.977477
Target:  5'- cGAUGUGAUgcuuugCAAUacgaGCaauAGCCGAGUCCGa -3'
miRNA:   3'- -CUACGCUA------GUUAg---CG---UCGGCUUAGGU- -5'
16699 3' -51 NC_004156.1 + 196629 0.7 0.966213
Target:  5'- gGAUGCGcaUAGUgGCAGCCaGAcuGUCCAa -3'
miRNA:   3'- -CUACGCuaGUUAgCGUCGG-CU--UAGGU- -5'
16699 3' -51 NC_004156.1 + 207380 0.71 0.951467
Target:  5'- -uUGCGAUCAAUCaaCGGUCG-AUCCGg -3'
miRNA:   3'- cuACGCUAGUUAGc-GUCGGCuUAGGU- -5'
16699 3' -51 NC_004156.1 + 190103 0.73 0.891061
Target:  5'- cGAUGCGAUauccaguAUCGCuauCCGAAUCCGu -3'
miRNA:   3'- -CUACGCUAgu-----UAGCGuc-GGCUUAGGU- -5'
16699 3' -51 NC_004156.1 + 69243 0.73 0.891061
Target:  5'- uGAUGCGA----UCGguGCCGAcgCCAc -3'
miRNA:   3'- -CUACGCUaguuAGCguCGGCUuaGGU- -5'
16699 3' -51 NC_004156.1 + 207091 1.09 0.011479
Target:  5'- cGAUGCGAUCAAUCGCAGCCGAAUCCAu -3'
miRNA:   3'- -CUACGCUAGUUAGCGUCGGCUUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.