miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1670 3' -56.2 NC_001347.2 + 13508 0.66 0.966047
Target:  5'- aCGcCGgg-UGCUCaCCcgCCGGGCGGc -3'
miRNA:   3'- -GCaGCauuGCGAG-GGuaGGCCUGCCa -5'
1670 3' -56.2 NC_001347.2 + 38691 0.66 0.962883
Target:  5'- cCGcCGgcGCaGCUCCCGUCCGaGCGc- -3'
miRNA:   3'- -GCaGCauUG-CGAGGGUAGGCcUGCca -5'
1670 3' -56.2 NC_001347.2 + 118875 0.66 0.952177
Target:  5'- cCGUCGaaucAGCGUcgUCCCcacgcCCGGACGGc -3'
miRNA:   3'- -GCAGCa---UUGCG--AGGGua---GGCCUGCCa -5'
1670 3' -56.2 NC_001347.2 + 55483 0.67 0.94819
Target:  5'- uGUCGUAAcaacucCGC-CCCAUUgacgcaaaUGGGCGGUa -3'
miRNA:   3'- gCAGCAUU------GCGaGGGUAG--------GCCUGCCA- -5'
1670 3' -56.2 NC_001347.2 + 192912 0.67 0.939572
Target:  5'- --cCGUAGauCGCUCCCGggugcCCGaGACGGg -3'
miRNA:   3'- gcaGCAUU--GCGAGGGUa----GGC-CUGCCa -5'
1670 3' -56.2 NC_001347.2 + 97417 0.67 0.934937
Target:  5'- gCGgCGcuaGACGCUCcuCCAUCuCGGGCGGa -3'
miRNA:   3'- -GCaGCa--UUGCGAG--GGUAG-GCCUGCCa -5'
1670 3' -56.2 NC_001347.2 + 132274 0.67 0.930082
Target:  5'- aGUCGgaaaacuCGCgCCCGcuuccCCGGACGGUu -3'
miRNA:   3'- gCAGCauu----GCGaGGGUa----GGCCUGCCA- -5'
1670 3' -56.2 NC_001347.2 + 152641 0.67 0.930082
Target:  5'- aCGUCGaucuUGACGCUgCUggCCGaGACGGc -3'
miRNA:   3'- -GCAGC----AUUGCGAgGGuaGGC-CUGCCa -5'
1670 3' -56.2 NC_001347.2 + 151869 0.67 0.925007
Target:  5'- aCGUUcUGACgGCgCCCgguGUCCGGACGGc -3'
miRNA:   3'- -GCAGcAUUG-CGaGGG---UAGGCCUGCCa -5'
1670 3' -56.2 NC_001347.2 + 203055 0.68 0.913635
Target:  5'- gGUCauGUGGcCGCUUCUgaaaaacaacguaGUCCGGACGGg -3'
miRNA:   3'- gCAG--CAUU-GCGAGGG-------------UAGGCCUGCCa -5'
1670 3' -56.2 NC_001347.2 + 191160 0.69 0.889976
Target:  5'- cCG-CGUGACGCUgaCCCGUCCaaaGGGCGc- -3'
miRNA:   3'- -GCaGCAUUGCGA--GGGUAGG---CCUGCca -5'
1670 3' -56.2 NC_001347.2 + 165988 0.72 0.716367
Target:  5'- -uUCGUAGCGCgcaCCCAggaccUCCGGuACGGa -3'
miRNA:   3'- gcAGCAUUGCGa--GGGU-----AGGCC-UGCCa -5'
1670 3' -56.2 NC_001347.2 + 140035 0.72 0.706796
Target:  5'- aGUCGUcGGCGCggcaUCCCAgcgCCGG-CGGUa -3'
miRNA:   3'- gCAGCA-UUGCG----AGGGUa--GGCCuGCCA- -5'
1670 3' -56.2 NC_001347.2 + 98025 0.73 0.668011
Target:  5'- gCGUCG-GACGCUCC--UCCGGACGa- -3'
miRNA:   3'- -GCAGCaUUGCGAGGguAGGCCUGCca -5'
1670 3' -56.2 NC_001347.2 + 112579 1.08 0.005878
Target:  5'- cCGUCGUAACGCUCCCAUCCGGACGGUg -3'
miRNA:   3'- -GCAGCAUUGCGAGGGUAGGCCUGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.