Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1670 | 3' | -56.2 | NC_001347.2 | + | 13508 | 0.66 | 0.966047 |
Target: 5'- aCGcCGgg-UGCUCaCCcgCCGGGCGGc -3' miRNA: 3'- -GCaGCauuGCGAG-GGuaGGCCUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 118875 | 0.66 | 0.952177 |
Target: 5'- cCGUCGaaucAGCGUcgUCCCcacgcCCGGACGGc -3' miRNA: 3'- -GCAGCa---UUGCG--AGGGua---GGCCUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 38691 | 0.66 | 0.962883 |
Target: 5'- cCGcCGgcGCaGCUCCCGUCCGaGCGc- -3' miRNA: 3'- -GCaGCauUG-CGAGGGUAGGCcUGCca -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 151869 | 0.67 | 0.925007 |
Target: 5'- aCGUUcUGACgGCgCCCgguGUCCGGACGGc -3' miRNA: 3'- -GCAGcAUUG-CGaGGG---UAGGCCUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 132274 | 0.67 | 0.930082 |
Target: 5'- aGUCGgaaaacuCGCgCCCGcuuccCCGGACGGUu -3' miRNA: 3'- gCAGCauu----GCGaGGGUa----GGCCUGCCA- -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 152641 | 0.67 | 0.930082 |
Target: 5'- aCGUCGaucuUGACGCUgCUggCCGaGACGGc -3' miRNA: 3'- -GCAGC----AUUGCGAgGGuaGGC-CUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 97417 | 0.67 | 0.934937 |
Target: 5'- gCGgCGcuaGACGCUCcuCCAUCuCGGGCGGa -3' miRNA: 3'- -GCaGCa--UUGCGAG--GGUAG-GCCUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 55483 | 0.67 | 0.94819 |
Target: 5'- uGUCGUAAcaacucCGC-CCCAUUgacgcaaaUGGGCGGUa -3' miRNA: 3'- gCAGCAUU------GCGaGGGUAG--------GCCUGCCA- -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 192912 | 0.67 | 0.939572 |
Target: 5'- --cCGUAGauCGCUCCCGggugcCCGaGACGGg -3' miRNA: 3'- gcaGCAUU--GCGAGGGUa----GGC-CUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 203055 | 0.68 | 0.913635 |
Target: 5'- gGUCauGUGGcCGCUUCUgaaaaacaacguaGUCCGGACGGg -3' miRNA: 3'- gCAG--CAUU-GCGAGGG-------------UAGGCCUGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 191160 | 0.69 | 0.889976 |
Target: 5'- cCG-CGUGACGCUgaCCCGUCCaaaGGGCGc- -3' miRNA: 3'- -GCaGCAUUGCGA--GGGUAGG---CCUGCca -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 165988 | 0.72 | 0.716367 |
Target: 5'- -uUCGUAGCGCgcaCCCAggaccUCCGGuACGGa -3' miRNA: 3'- gcAGCAUUGCGa--GGGU-----AGGCC-UGCCa -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 140035 | 0.72 | 0.706796 |
Target: 5'- aGUCGUcGGCGCggcaUCCCAgcgCCGG-CGGUa -3' miRNA: 3'- gCAGCA-UUGCG----AGGGUa--GGCCuGCCA- -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 98025 | 0.73 | 0.668011 |
Target: 5'- gCGUCG-GACGCUCC--UCCGGACGa- -3' miRNA: 3'- -GCAGCaUUGCGAGGguAGGCCUGCca -5' |
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1670 | 3' | -56.2 | NC_001347.2 | + | 112579 | 1.08 | 0.005878 |
Target: 5'- cCGUCGUAACGCUCCCAUCCGGACGGUg -3' miRNA: 3'- -GCAGCAUUGCGAGGGUAGGCCUGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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