miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1670 5' -61 NC_001347.2 + 187614 0.66 0.822882
Target:  5'- -----aCCUGGAGGGUUGCGCCGuaACa -3'
miRNA:   3'- uauggcGGGCCUCUCAGCGCGGC--UGc -5'
1670 5' -61 NC_001347.2 + 175495 0.66 0.822882
Target:  5'- cGUACUGCCUGGuuAGUU-CGCCGuCGc -3'
miRNA:   3'- -UAUGGCGGGCCucUCAGcGCGGCuGC- -5'
1670 5' -61 NC_001347.2 + 201404 0.66 0.80659
Target:  5'- -gACCG-CUGGAGGccuccuaagacGUCGCGaCCGugGa -3'
miRNA:   3'- uaUGGCgGGCCUCU-----------CAGCGC-GGCugC- -5'
1670 5' -61 NC_001347.2 + 38650 0.66 0.801591
Target:  5'- -cGCCuGCCCGGcGucugcagcgccaccGUCGUGCCGGCc -3'
miRNA:   3'- uaUGG-CGGGCCuCu-------------CAGCGCGGCUGc -5'
1670 5' -61 NC_001347.2 + 156666 0.66 0.798232
Target:  5'- -cGCCGCCacccauggCGGcGGGUCGUGgCGGCu -3'
miRNA:   3'- uaUGGCGG--------GCCuCUCAGCGCgGCUGc -5'
1670 5' -61 NC_001347.2 + 105070 0.66 0.789742
Target:  5'- -gGCCGUCCGGuGAGgagGaCGgCGACGa -3'
miRNA:   3'- uaUGGCGGGCCuCUCag-C-GCgGCUGC- -5'
1670 5' -61 NC_001347.2 + 184508 0.66 0.781127
Target:  5'- -cGCCGCgCCGuguGAGAGUUccaggGcCGCCGACa -3'
miRNA:   3'- uaUGGCG-GGC---CUCUCAG-----C-GCGGCUGc -5'
1670 5' -61 NC_001347.2 + 145634 0.67 0.772394
Target:  5'- -gACUGCggguguuucCCGGAGGGUC-CGCgCGACa -3'
miRNA:   3'- uaUGGCG---------GGCCUCUCAGcGCG-GCUGc -5'
1670 5' -61 NC_001347.2 + 188610 0.67 0.772394
Target:  5'- -gGCCaGCCCgGGAGGGUC-CGUCGGg- -3'
miRNA:   3'- uaUGG-CGGG-CCUCUCAGcGCGGCUgc -5'
1670 5' -61 NC_001347.2 + 113959 0.67 0.763551
Target:  5'- --cUCGUCCGGAGAcugGUCGUaGCgGGCGa -3'
miRNA:   3'- uauGGCGGGCCUCU---CAGCG-CGgCUGC- -5'
1670 5' -61 NC_001347.2 + 185448 0.67 0.754606
Target:  5'- cGUACCGUgCcGAGAcagaaGUUGCGCCgGACGg -3'
miRNA:   3'- -UAUGGCGgGcCUCU-----CAGCGCGG-CUGC- -5'
1670 5' -61 NC_001347.2 + 90540 0.67 0.745566
Target:  5'- -cGgCGgCCGGAGAc-UGCGCCGACa -3'
miRNA:   3'- uaUgGCgGGCCUCUcaGCGCGGCUGc -5'
1670 5' -61 NC_001347.2 + 40613 0.67 0.745566
Target:  5'- -gGCCGCcggcgaugCCGGGGuGUUGCGgaGACGg -3'
miRNA:   3'- uaUGGCG--------GGCCUCuCAGCGCggCUGC- -5'
1670 5' -61 NC_001347.2 + 197718 0.67 0.736438
Target:  5'- -aACCGCUCGGGccugcGAcgCGaCGCCGACGg -3'
miRNA:   3'- uaUGGCGGGCCU-----CUcaGC-GCGGCUGC- -5'
1670 5' -61 NC_001347.2 + 82801 0.67 0.736438
Target:  5'- -gACCGCCCGGAcgugcucaaaccGcGUCGUgaGCgCGGCGg -3'
miRNA:   3'- uaUGGCGGGCCU------------CuCAGCG--CG-GCUGC- -5'
1670 5' -61 NC_001347.2 + 166626 0.67 0.727231
Target:  5'- -cGCCGUCCuccGAGAGgCGCGcCCGGCc -3'
miRNA:   3'- uaUGGCGGGc--CUCUCaGCGC-GGCUGc -5'
1670 5' -61 NC_001347.2 + 28248 0.67 0.727231
Target:  5'- cGUACUGgCUGGAacGUCgGCGCCGACc -3'
miRNA:   3'- -UAUGGCgGGCCUcuCAG-CGCGGCUGc -5'
1670 5' -61 NC_001347.2 + 185404 0.68 0.689756
Target:  5'- -cACCGCUCGGAGAaaacaaCGUCGACGg -3'
miRNA:   3'- uaUGGCGGGCCUCUcagc--GCGGCUGC- -5'
1670 5' -61 NC_001347.2 + 135189 0.69 0.66118
Target:  5'- -cGCCacaGCCUGGuGGGGUCcgagGCGCCGACc -3'
miRNA:   3'- uaUGG---CGGGCC-UCUCAG----CGCGGCUGc -5'
1670 5' -61 NC_001347.2 + 2026 0.69 0.632419
Target:  5'- -gGCCGCCggCGGGGA--CGCGCCGuGCGc -3'
miRNA:   3'- uaUGGCGG--GCCUCUcaGCGCGGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.