Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1670 | 5' | -61 | NC_001347.2 | + | 88230 | 0.7 | 0.565588 |
Target: 5'- -cGCUGUCCGaGGGGUCGCuGCCGcCGg -3' miRNA: 3'- uaUGGCGGGCcUCUCAGCG-CGGCuGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 113637 | 0.7 | 0.55616 |
Target: 5'- -cGCCGgCUGGAGAG-CGagagGCCGGCGu -3' miRNA: 3'- uaUGGCgGGCCUCUCaGCg---CGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 1711 | 0.71 | 0.509807 |
Target: 5'- -cGgCGCUCGGAcggGAGcUGCGCCGGCGg -3' miRNA: 3'- uaUgGCGGGCCU---CUCaGCGCGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 196948 | 0.71 | 0.509807 |
Target: 5'- -aGCUGCgCCGGGGcuGUCGCgcgccGCCGACGc -3' miRNA: 3'- uaUGGCG-GGCCUCu-CAGCG-----CGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 75343 | 0.72 | 0.465149 |
Target: 5'- -gGCCGCCCuGAGAagaaucCGCGUCGACGu -3' miRNA: 3'- uaUGGCGGGcCUCUca----GCGCGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 142383 | 0.72 | 0.45646 |
Target: 5'- -cGCCGCCgGGGGGGagGUGCaCGACc -3' miRNA: 3'- uaUGGCGGgCCUCUCagCGCG-GCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 39327 | 0.72 | 0.44786 |
Target: 5'- uUGCCGCUacuCGGAGGGgCGC-CCGGCGg -3' miRNA: 3'- uAUGGCGG---GCCUCUCaGCGcGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 112614 | 1.07 | 0.002413 |
Target: 5'- cAUACCGCCCGGAGAGUCGCGCCGACGg -3' miRNA: 3'- -UAUGGCGGGCCUCUCAGCGCGGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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