Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1670 | 5' | -61 | NC_001347.2 | + | 201404 | 0.66 | 0.80659 |
Target: 5'- -gACCG-CUGGAGGccuccuaagacGUCGCGaCCGugGa -3' miRNA: 3'- uaUGGCgGGCCUCU-----------CAGCGC-GGCugC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 197718 | 0.67 | 0.736438 |
Target: 5'- -aACCGCUCGGGccugcGAcgCGaCGCCGACGg -3' miRNA: 3'- uaUGGCGGGCCU-----CUcaGC-GCGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 196948 | 0.71 | 0.509807 |
Target: 5'- -aGCUGCgCCGGGGcuGUCGCgcgccGCCGACGc -3' miRNA: 3'- uaUGGCG-GGCCUCu-CAGCG-----CGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 188610 | 0.67 | 0.772394 |
Target: 5'- -gGCCaGCCCgGGAGGGUC-CGUCGGg- -3' miRNA: 3'- uaUGG-CGGG-CCUCUCAGcGCGGCUgc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 187614 | 0.66 | 0.822882 |
Target: 5'- -----aCCUGGAGGGUUGCGCCGuaACa -3' miRNA: 3'- uauggcGGGCCUCUCAGCGCGGC--UGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 185448 | 0.67 | 0.754606 |
Target: 5'- cGUACCGUgCcGAGAcagaaGUUGCGCCgGACGg -3' miRNA: 3'- -UAUGGCGgGcCUCU-----CAGCGCGG-CUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 185404 | 0.68 | 0.689756 |
Target: 5'- -cACCGCUCGGAGAaaacaaCGUCGACGg -3' miRNA: 3'- uaUGGCGGGCCUCUcagc--GCGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 184508 | 0.66 | 0.781127 |
Target: 5'- -cGCCGCgCCGuguGAGAGUUccaggGcCGCCGACa -3' miRNA: 3'- uaUGGCG-GGC---CUCUCAG-----C-GCGGCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 175495 | 0.66 | 0.822882 |
Target: 5'- cGUACUGCCUGGuuAGUU-CGCCGuCGc -3' miRNA: 3'- -UAUGGCGGGCCucUCAGcGCGGCuGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 166626 | 0.67 | 0.727231 |
Target: 5'- -cGCCGUCCuccGAGAGgCGCGcCCGGCc -3' miRNA: 3'- uaUGGCGGGc--CUCUCaGCGC-GGCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 156666 | 0.66 | 0.798232 |
Target: 5'- -cGCCGCCacccauggCGGcGGGUCGUGgCGGCu -3' miRNA: 3'- uaUGGCGG--------GCCuCUCAGCGCgGCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 145634 | 0.67 | 0.772394 |
Target: 5'- -gACUGCggguguuucCCGGAGGGUC-CGCgCGACa -3' miRNA: 3'- uaUGGCG---------GGCCUCUCAGcGCG-GCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 142383 | 0.72 | 0.45646 |
Target: 5'- -cGCCGCCgGGGGGGagGUGCaCGACc -3' miRNA: 3'- uaUGGCGGgCCUCUCagCGCG-GCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 135189 | 0.69 | 0.66118 |
Target: 5'- -cGCCacaGCCUGGuGGGGUCcgagGCGCCGACc -3' miRNA: 3'- uaUGG---CGGGCC-UCUCAG----CGCGGCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 113959 | 0.67 | 0.763551 |
Target: 5'- --cUCGUCCGGAGAcugGUCGUaGCgGGCGa -3' miRNA: 3'- uauGGCGGGCCUCU---CAGCG-CGgCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 113637 | 0.7 | 0.55616 |
Target: 5'- -cGCCGgCUGGAGAG-CGagagGCCGGCGu -3' miRNA: 3'- uaUGGCgGGCCUCUCaGCg---CGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 112614 | 1.07 | 0.002413 |
Target: 5'- cAUACCGCCCGGAGAGUCGCGCCGACGg -3' miRNA: 3'- -UAUGGCGGGCCUCUCAGCGCGGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 105070 | 0.66 | 0.789742 |
Target: 5'- -gGCCGUCCGGuGAGgagGaCGgCGACGa -3' miRNA: 3'- uaUGGCGGGCCuCUCag-C-GCgGCUGC- -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 90540 | 0.67 | 0.745566 |
Target: 5'- -cGgCGgCCGGAGAc-UGCGCCGACa -3' miRNA: 3'- uaUgGCgGGCCUCUcaGCGCGGCUGc -5' |
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1670 | 5' | -61 | NC_001347.2 | + | 88230 | 0.7 | 0.565588 |
Target: 5'- -cGCUGUCCGaGGGGUCGCuGCCGcCGg -3' miRNA: 3'- uaUGGCGGGCcUCUCAGCG-CGGCuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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