miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16700 5' -52.6 NC_004156.1 + 44685 0.66 0.992143
Target:  5'- aGGUgCuGUGCaCAGAGCUga--CGGCCa -3'
miRNA:   3'- aCCA-GuUACG-GUUUCGGauacGCCGG- -5'
16700 5' -52.6 NC_004156.1 + 169539 0.66 0.991016
Target:  5'- cGGUCAacgaGUGCCGuacGUgUUGUGCGGUg -3'
miRNA:   3'- aCCAGU----UACGGUuu-CG-GAUACGCCGg -5'
16700 5' -52.6 NC_004156.1 + 141258 0.66 0.991016
Target:  5'- cGGa-GAUuCCcAAGCCUGUGCaGCCg -3'
miRNA:   3'- aCCagUUAcGGuUUCGGAUACGcCGG- -5'
16700 5' -52.6 NC_004156.1 + 84308 0.66 0.989366
Target:  5'- aGGUUGAUGa--GAGCCUcugggacucgucaaAUGCGGUCc -3'
miRNA:   3'- aCCAGUUACgguUUCGGA--------------UACGCCGG- -5'
16700 5' -52.6 NC_004156.1 + 147612 0.66 0.988384
Target:  5'- cGaUCGAUGCCAAAGCUgGUGaaGCg -3'
miRNA:   3'- aCcAGUUACGGUUUCGGaUACgcCGg -5'
16700 5' -52.6 NC_004156.1 + 24675 0.67 0.985189
Target:  5'- cGGUUA--GCUAuAAGUCgGUGCGGCUa -3'
miRNA:   3'- aCCAGUuaCGGU-UUCGGaUACGCCGG- -5'
16700 5' -52.6 NC_004156.1 + 82012 0.67 0.981364
Target:  5'- aGGU--AUGCCuacGAGUCUAUacGCGGCa -3'
miRNA:   3'- aCCAguUACGGu--UUCGGAUA--CGCCGg -5'
16700 5' -52.6 NC_004156.1 + 129838 0.67 0.981364
Target:  5'- aUGGUgGGUGCCAAGaCCUuUGaggaggagGGCCa -3'
miRNA:   3'- -ACCAgUUACGGUUUcGGAuACg-------CCGG- -5'
16700 5' -52.6 NC_004156.1 + 75596 0.67 0.981364
Target:  5'- gUGuGUCAG-GCUgcGGCCacaaUGUGCGGUCa -3'
miRNA:   3'- -AC-CAGUUaCGGuuUCGG----AUACGCCGG- -5'
16700 5' -52.6 NC_004156.1 + 136131 0.68 0.974302
Target:  5'- gGGUCGGUGCuUAAAGUUUGacuUGGCCg -3'
miRNA:   3'- aCCAGUUACG-GUUUCGGAUac-GCCGG- -5'
16700 5' -52.6 NC_004156.1 + 19233 0.68 0.965472
Target:  5'- uUGGUCuguuUGCC--AGUCUGUGaGGCUa -3'
miRNA:   3'- -ACCAGuu--ACGGuuUCGGAUACgCCGG- -5'
16700 5' -52.6 NC_004156.1 + 102045 0.69 0.958515
Target:  5'- cGGUCGAUGCC---GCC-AUGUccuGGCUg -3'
miRNA:   3'- aCCAGUUACGGuuuCGGaUACG---CCGG- -5'
16700 5' -52.6 NC_004156.1 + 191139 0.69 0.956252
Target:  5'- cGGUgGAUGCCAacucggaaucgguacGAGCCUAUaCGGa- -3'
miRNA:   3'- aCCAgUUACGGU---------------UUCGGAUAcGCCgg -5'
16700 5' -52.6 NC_004156.1 + 48693 0.7 0.921367
Target:  5'- gGGUCGA-GCUggGGCaauagcAUGCGGCa -3'
miRNA:   3'- aCCAGUUaCGGuuUCGga----UACGCCGg -5'
16700 5' -52.6 NC_004156.1 + 36965 0.72 0.837392
Target:  5'- cGGUacUAGUGUgGAAGCCUcaguugGUGGCCa -3'
miRNA:   3'- aCCA--GUUACGgUUUCGGAua----CGCCGG- -5'
16700 5' -52.6 NC_004156.1 + 211214 1.12 0.005023
Target:  5'- cUGGUCAAUGCCAAAGCCUAUGCGGCCu -3'
miRNA:   3'- -ACCAGUUACGGUUUCGGAUACGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.