Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16701 | 3' | -49.1 | NC_004156.1 | + | 213694 | 1.14 | 0.011379 |
Target: 5'- gCCGCUCUUGUACAACACCGACUCUUCg -3' miRNA: 3'- -GGCGAGAACAUGUUGUGGCUGAGAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 80823 | 0.78 | 0.792198 |
Target: 5'- gCCGaCUCUUGUACAGCAUUGcACUCa-- -3' miRNA: 3'- -GGC-GAGAACAUGUUGUGGC-UGAGaag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 21665 | 0.75 | 0.896637 |
Target: 5'- aCGCUcCUUGUACAGCGCCaguguuGAaUCUUCg -3' miRNA: 3'- gGCGA-GAACAUGUUGUGG------CUgAGAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 145640 | 0.74 | 0.926782 |
Target: 5'- gCGCUCUUugACGGCAUCGGCaCUUCg -3' miRNA: 3'- gGCGAGAAcaUGUUGUGGCUGaGAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 67802 | 0.73 | 0.958696 |
Target: 5'- aCUGCUCcUGUggACGACAUgGACUCUg- -3' miRNA: 3'- -GGCGAGaACA--UGUUGUGgCUGAGAag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 133048 | 0.71 | 0.988608 |
Target: 5'- aUGCUCUgGUugAACAUCGAgUCUa- -3' miRNA: 3'- gGCGAGAaCAugUUGUGGCUgAGAag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 221852 | 0.71 | 0.988608 |
Target: 5'- aCGCUCUagaaaacgcuUGUACGAUACacuaGACUCg-- -3' miRNA: 3'- gGCGAGA----------ACAUGUUGUGg---CUGAGaag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 112124 | 0.71 | 0.985429 |
Target: 5'- gUGCcCUUGUugAACAUuugCGACUCUUUg -3' miRNA: 3'- gGCGaGAACAugUUGUG---GCUGAGAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 46030 | 0.7 | 0.99122 |
Target: 5'- aCUGCUCaacuUUGUGuuCAACcuagGCCGACUCUUg -3' miRNA: 3'- -GGCGAG----AACAU--GUUG----UGGCUGAGAAg -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 209174 | 0.7 | 0.99122 |
Target: 5'- aCCGaCUCUgguucugGUACuGAUACUGACUCUg- -3' miRNA: 3'- -GGC-GAGAa------CAUG-UUGUGGCUGAGAag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 138197 | 0.7 | 0.989981 |
Target: 5'- aCCGCUCUUGgcCGGCACCauAUUCa-- -3' miRNA: 3'- -GGCGAGAACauGUUGUGGc-UGAGaag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 107192 | 0.69 | 0.996343 |
Target: 5'- gCGCUCUUGUcuccgGGCACUGugUUUUUg -3' miRNA: 3'- gGCGAGAACAug---UUGUGGCugAGAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 15799 | 0.69 | 0.997362 |
Target: 5'- uUGUUCUUGUACG-CACUGACcgcCUUUa -3' miRNA: 3'- gGCGAGAACAUGUuGUGGCUGa--GAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 137271 | 0.69 | 0.997362 |
Target: 5'- aCCGCUaCUaUGUACAuucgACGCCuACUCUg- -3' miRNA: 3'- -GGCGA-GA-ACAUGU----UGUGGcUGAGAag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 223293 | 0.69 | 0.996887 |
Target: 5'- uCgGCUgUUGUucguCAGaguCCGACUCUUCu -3' miRNA: 3'- -GgCGAgAACAu---GUUgu-GGCUGAGAAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 178419 | 0.69 | 0.997362 |
Target: 5'- -gGCUCUUGUGCcAgACCG-CUCagUUCa -3' miRNA: 3'- ggCGAGAACAUGuUgUGGCuGAG--AAG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 7776 | 0.68 | 0.99893 |
Target: 5'- cCCGCUCUUGU----CACCGAUgCUg- -3' miRNA: 3'- -GGCGAGAACAuguuGUGGCUGaGAag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 36491 | 0.68 | 0.99893 |
Target: 5'- cUCGCUCUgguuggGUGCAaagguguaaaACACCGACa---- -3' miRNA: 3'- -GGCGAGAa-----CAUGU----------UGUGGCUGagaag -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 45058 | 0.67 | 0.999281 |
Target: 5'- aCGCUuuacgCUUGUGC-ACACCGAUggcgUCa -3' miRNA: 3'- gGCGA-----GAACAUGuUGUGGCUGaga-AG- -5' |
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16701 | 3' | -49.1 | NC_004156.1 | + | 44440 | 0.67 | 0.999121 |
Target: 5'- -aGCUC-UGUGCAcagcaccucaaGCACCGGCaUCUg- -3' miRNA: 3'- ggCGAGaACAUGU-----------UGUGGCUG-AGAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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