Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16701 | 3' | -49.1 | NC_004156.1 | + | 67802 | 0.73 | 0.958696 |
Target: 5'- aCUGCUCcUGUggACGACAUgGACUCUg- -3' miRNA: 3'- -GGCGAGaACA--UGUUGUGgCUGAGAag -5' |
|||||||
16701 | 3' | -49.1 | NC_004156.1 | + | 145640 | 0.74 | 0.926782 |
Target: 5'- gCGCUCUUugACGGCAUCGGCaCUUCg -3' miRNA: 3'- gGCGAGAAcaUGUUGUGGCUGaGAAG- -5' |
|||||||
16701 | 3' | -49.1 | NC_004156.1 | + | 21665 | 0.75 | 0.896637 |
Target: 5'- aCGCUcCUUGUACAGCGCCaguguuGAaUCUUCg -3' miRNA: 3'- gGCGA-GAACAUGUUGUGG------CUgAGAAG- -5' |
|||||||
16701 | 3' | -49.1 | NC_004156.1 | + | 80823 | 0.78 | 0.792198 |
Target: 5'- gCCGaCUCUUGUACAGCAUUGcACUCa-- -3' miRNA: 3'- -GGC-GAGAACAUGUUGUGGC-UGAGaag -5' |
|||||||
16701 | 3' | -49.1 | NC_004156.1 | + | 213694 | 1.14 | 0.011379 |
Target: 5'- gCCGCUCUUGUACAACACCGACUCUUCg -3' miRNA: 3'- -GGCGAGAACAUGUUGUGGCUGAGAAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home